BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00048960
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrh...   175   7e-44
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   173   9e-44
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p...   173   9e-44
gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus ...   173   9e-44
gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentr...   173   9e-44

>gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  175 bits (443), Expect(2) = 7e-44
 Identities = 84/90 (93%), Positives = 85/90 (94%)
 Frame = +2

Query: 35  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLAKNLAL 214
           VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL KNLAL
Sbjct: 481 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL 540

Query: 215 MVYITVGSAANPILEFLDEWSMESFEA*QP 304
           MVYITVGSAANPILEFLDEWS E+FE   P
Sbjct: 541 MVYITVGSAANPILEFLDEWSTENFEEISP 570



 Score = 27.3 bits (59), Expect(2) = 7e-44
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 EISPAVIPQSTKI 434
           EISPAVIPQ+TKI
Sbjct: 567 EISPAVIPQATKI 579


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score =  173 bits (439), Expect(2) = 9e-44
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = +2

Query: 35  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLAKNLAL 214
           VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL KNLAL
Sbjct: 474 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL 533

Query: 215 MVYITVGSAANPILEFLDEWSMESFEA*QP 304
           MVYITVGSAANPILEFL+EWS E+FE   P
Sbjct: 534 MVYITVGSAANPILEFLEEWSTENFEEISP 563



 Score = 28.5 bits (62), Expect(2) = 9e-44
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 EISPAVIPQSTKI 434
           EISPAVIPQSTKI
Sbjct: 560 EISPAVIPQSTKI 572


>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  173 bits (439), Expect(2) = 9e-44
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = +2

Query: 35  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLAKNLAL 214
           VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL KNLAL
Sbjct: 368 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL 427

Query: 215 MVYITVGSAANPILEFLDEWSMESFEA*QP 304
           MVYITVGSAANPILEFL+EWS E+FE   P
Sbjct: 428 MVYITVGSAANPILEFLEEWSTENFEEISP 457



 Score = 28.5 bits (62), Expect(2) = 9e-44
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 EISPAVIPQSTKI 434
           EISPAVIPQSTKI
Sbjct: 454 EISPAVIPQSTKI 466


>gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  173 bits (439), Expect(2) = 9e-44
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = +2

Query: 35  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLAKNLAL 214
           VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL KNLAL
Sbjct: 368 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL 427

Query: 215 MVYITVGSAANPILEFLDEWSMESFEA*QP 304
           MVYITVGSAANPILEFL+EWS E+FE   P
Sbjct: 428 MVYITVGSAANPILEFLEEWSTENFEEISP 457



 Score = 28.5 bits (62), Expect(2) = 9e-44
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 EISPAVIPQSTKI 434
           EISPAVIPQSTKI
Sbjct: 454 EISPAVIPQSTKI 466


>gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score =  173 bits (439), Expect(2) = 9e-44
 Identities = 83/90 (92%), Positives = 85/90 (94%)
 Frame = +2

Query: 35  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLAKNLAL 214
           VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL KNLAL
Sbjct: 368 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL 427

Query: 215 MVYITVGSAANPILEFLDEWSMESFEA*QP 304
           MVYITVGSAANPILEFL+EWS E+FE   P
Sbjct: 428 MVYITVGSAANPILEFLEEWSTENFEEISP 457



 Score = 28.5 bits (62), Expect(2) = 9e-44
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 EISPAVIPQSTKI 434
           EISPAVIPQSTKI
Sbjct: 454 EISPAVIPQSTKI 466