BLASTX nr result

ID: Atractylodes22_contig00048740 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00048740
         (229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530366.1| Transmembrane and coiled-coil domains protei...    71   8e-11
ref|XP_002280441.1| PREDICTED: transmembrane and coiled-coil dom...    71   8e-11
gb|AFW90618.1| transmembrane and coiled-coil domains protein [So...    70   2e-10
gb|AAY43795.1| Fb27 [Gossypium hirsutum]                               70   2e-10
gb|AAQ84318.1| fiber protein Fb27 [Gossypium barbadense]               68   9e-10

>ref|XP_002530366.1| Transmembrane and coiled-coil domains protein, putative [Ricinus
           communis] gi|223530113|gb|EEF32027.1| Transmembrane and
           coiled-coil domains protein, putative [Ricinus communis]
          Length = 192

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   LYFLCSISMRTNLQKFLGFSPPRGAAGAGLFPVHDASKTN 122
           LYFLCSIS+RTNLQKFLGFSPPRGAAGAGLFP+ D  KTN
Sbjct: 154 LYFLCSISIRTNLQKFLGFSPPRGAAGAGLFPMPD-PKTN 192


>ref|XP_002280441.1| PREDICTED: transmembrane and coiled-coil domains protein 1 [Vitis
           vinifera] gi|297739810|emb|CBI29992.3| unnamed protein
           product [Vitis vinifera]
          Length = 193

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   LYFLCSISMRTNLQKFLGFSPPRGAAGAGLFPVHDASKTN 122
           LYFLCSIS+RTNLQKFLGFSPPRGAAGAGLFP+ D  KTN
Sbjct: 155 LYFLCSISIRTNLQKFLGFSPPRGAAGAGLFPMPD-PKTN 193


>gb|AFW90618.1| transmembrane and coiled-coil domains protein [Solanum tuberosum]
          Length = 194

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 34/40 (85%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   LYFLCSISMRTNLQKFLGFSPPRGAAGAGLFPVHDASKTN 122
           LYFLCSIS+RTNLQKFLGFSPPRG+AGAGLFP+ D  KTN
Sbjct: 156 LYFLCSISIRTNLQKFLGFSPPRGSAGAGLFPMPD-PKTN 194


>gb|AAY43795.1| Fb27 [Gossypium hirsutum]
          Length = 194

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   LYFLCSISMRTNLQKFLGFSPPRGAAGAGLFPVHD 107
           LYFLCSIS+RTNLQKFLGFSPPRGAAGAGLFP+ D
Sbjct: 156 LYFLCSISIRTNLQKFLGFSPPRGAAGAGLFPMPD 190


>gb|AAQ84318.1| fiber protein Fb27 [Gossypium barbadense]
          Length = 194

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 34/40 (85%), Positives = 36/40 (90%)
 Frame = +3

Query: 3   LYFLCSISMRTNLQKFLGFSPPRGAAGAGLFPVHDASKTN 122
           LYFL SIS+RTNLQKFLGFSPPRGAAGAGLFP+ D  KTN
Sbjct: 156 LYFLFSISIRTNLQKFLGFSPPRGAAGAGLFPIPD-PKTN 194


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