BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00048686
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   197   7e-49
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   174   9e-42
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   174   9e-42
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   174   9e-42
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   168   4e-40

>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  197 bits (501), Expect = 7e-49
 Identities = 95/146 (65%), Positives = 113/146 (77%)
 Frame = +1

Query: 1    LLETVIKGSSNVKKVDILWKDCPKTSKSCNESSGELYLRVFMSESCDRRKFWRVLLGDCI 180
            LLETVIKG S  KKVDILWK+ P  SKS    +GELYL+VFMSESCDR KFW  L+  C+
Sbjct: 763  LLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCL 822

Query: 181  QIMDMIDWERSHPDDIQDVISAQGIDAARNHFLCTLKSAISDTGKNVLPEHLALAADCLS 360
            QI D+IDWERS+PDD+ D+  A GID A  +FLC L SA+S+TGK +LPEHL LAAD L+
Sbjct: 823  QIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLT 882

Query: 361  CNGEFVPINAKGLLLQRQAASVSAPF 438
              GEFVP++AKGL LQR+AA V +PF
Sbjct: 883  TTGEFVPLSAKGLTLQRKAAGVVSPF 908


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  174 bits (440), Expect = 9e-42
 Identities = 86/146 (58%), Positives = 104/146 (71%)
 Frame = +1

Query: 1    LLETVIKGSSNVKKVDILWKDCPKTSKSCNESSGELYLRVFMSESCDRRKFWRVLLGDCI 180
            LL  V+KG  +VKKVDILW D P  S     SSG LYLRV++S  C ++ FW VL+  C+
Sbjct: 1113 LLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACL 1171

Query: 181  QIMDMIDWERSHPDDIQDVISAQGIDAARNHFLCTLKSAISDTGKNVLPEHLALAADCLS 360
            QIMDMIDWERSHPD+I D+    GIDA   +FL +LKSAISD GK VLPEHL L A CLS
Sbjct: 1172 QIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLS 1231

Query: 361  CNGEFVPINAKGLLLQRQAASVSAPF 438
              GEFV +NAKG+  Q++  S+S+PF
Sbjct: 1232 ATGEFVGLNAKGMARQKELTSISSPF 1257


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  174 bits (440), Expect = 9e-42
 Identities = 87/146 (59%), Positives = 102/146 (69%)
 Frame = +1

Query: 1    LLETVIKGSSNVKKVDILWKDCPKTSKSCNESSGELYLRVFMSESCDRRKFWRVLLGDCI 180
            LLETVIKG   ++KVDILW D PK  KS N   GEL+LRV MS   D+ + W  L+ DC+
Sbjct: 1125 LLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCL 1184

Query: 181  QIMDMIDWERSHPDDIQDVISAQGIDAARNHFLCTLKSAISDTGKNVLPEHLALAADCLS 360
             IMD+IDW RSHPD+I +   A GIDA    FL  L+SA+SD GK VLPEHL L A+CLS
Sbjct: 1185 SIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLS 1244

Query: 361  CNGEFVPINAKGLLLQRQAASVSAPF 438
              GEFV +NAKGL  QR+ ASVS PF
Sbjct: 1245 VTGEFVGLNAKGLKRQREHASVSTPF 1270


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  174 bits (440), Expect = 9e-42
 Identities = 86/146 (58%), Positives = 104/146 (71%)
 Frame = +1

Query: 1    LLETVIKGSSNVKKVDILWKDCPKTSKSCNESSGELYLRVFMSESCDRRKFWRVLLGDCI 180
            LL  V+KG  +VKKVDILW D P  S     SSG LYLRV++S  C ++ FW VL+  C+
Sbjct: 1228 LLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACL 1286

Query: 181  QIMDMIDWERSHPDDIQDVISAQGIDAARNHFLCTLKSAISDTGKNVLPEHLALAADCLS 360
            QIMDMIDWERSHPD+I D+    GIDA   +FL +LKSAISD GK VLPEHL L A CLS
Sbjct: 1287 QIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLS 1346

Query: 361  CNGEFVPINAKGLLLQRQAASVSAPF 438
              GEFV +NAKG+  Q++  S+S+PF
Sbjct: 1347 ATGEFVGLNAKGMARQKELTSISSPF 1372


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  168 bits (426), Expect = 4e-40
 Identities = 85/146 (58%), Positives = 103/146 (70%)
 Frame = +1

Query: 1    LLETVIKGSSNVKKVDILWKDCPKTSKSCNESSGELYLRVFMSESCDRRKFWRVLLGDCI 180
            LL+T IKG   +KKVDILWKD PK +KS N S+GELYLRV MS   D   FW  L+  C 
Sbjct: 1265 LLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNGTFWGRLINHCH 1324

Query: 181  QIMDMIDWERSHPDDIQDVISAQGIDAARNHFLCTLKSAISDTGKNVLPEHLALAADCLS 360
            +IM +IDW RSHPD+I    SA GIDA   H+   L SA SDTGK++LP+HL L A+ LS
Sbjct: 1325 RIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKHLRLVANSLS 1384

Query: 361  CNGEFVPINAKGLLLQRQAASVSAPF 438
             +GEFV +NAKG+  QR+ ASVS+PF
Sbjct: 1385 ASGEFVGLNAKGMARQRKHASVSSPF 1410