BLASTX nr result

ID: Atractylodes22_contig00048144 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00048144
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152903.1| PREDICTED: uncharacterized protein LOC101208...    67   2e-09
gb|ADN34181.1| retrotransposon protein [Cucumis melo subsp. melo]      66   3e-09
gb|ACY01928.1| hypothetical protein [Beta vulgaris]                    65   4e-09
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    64   2e-08
gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo s...    64   2e-08

>ref|XP_004152903.1| PREDICTED: uncharacterized protein LOC101208187 [Cucumis sativus]
          Length = 1969

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = -3

Query: 229 PDVRRLSDQELQLKRARGLCYRCDEKFSPGHRCKHKELSVFVVQDDI 89
           P  RR +D ELQ +R + LCYRCDE FS GHRCK+KEL +++V DD+
Sbjct: 855 PPFRRWTDSELQARRDKDLCYRCDEPFSEGHRCKNKELRLYLVADDL 901


>gb|ADN34181.1| retrotransposon protein [Cucumis melo subsp. melo]
          Length = 295

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
 Frame = -3

Query: 346 TLGRIKGTSPWTGKKIQPLSTEIRGTTTNPTPKAPFNQPPDVRRLSDQELQLKRARGLCY 167
           TL    G   W    ++ L+  I+G      P     QPP V+RLSD E + +  +GLC+
Sbjct: 194 TLEECSGKPKWADFAMKQLTLPIKGNFVKKEP-----QPP-VKRLSDSEFRARLDKGLCF 247

Query: 166 RCDEKFSPGHRCK---HKELSVFVVQDD 92
           RC++K+SPGHRCK   ++EL  F+  +D
Sbjct: 248 RCNDKYSPGHRCKAKTNRELMFFITNED 275


>gb|ACY01928.1| hypothetical protein [Beta vulgaris]
          Length = 1583

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/59 (54%), Positives = 43/59 (72%)
 Frame = -3

Query: 268 TTNPTPKAPFNQPPDVRRLSDQELQLKRARGLCYRCDEKFSPGHRCKHKELSVFVVQDD 92
           TT P  K PF +   +RRLS++ELQ KR  GLC+RCDEK++ GHRCK KELS+ +  ++
Sbjct: 323 TTLPIAK-PFGE---IRRLSEKELQYKREHGLCFRCDEKWAIGHRCKKKELSILLGHEE 377


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 25/45 (55%), Positives = 39/45 (86%)
 Frame = -3

Query: 226 DVRRLSDQELQLKRARGLCYRCDEKFSPGHRCKHKELSVFVVQDD 92
           ++RRL+++ELQ KRA+GLC++CDEK+  GH+C+ KELSV  ++D+
Sbjct: 399 EMRRLTEKELQEKRAKGLCFKCDEKWGVGHQCRRKELSVLFMEDN 443


>gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1185

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 41/66 (62%)
 Frame = -3

Query: 286 TEIRGTTTNPTPKAPFNQPPDVRRLSDQELQLKRARGLCYRCDEKFSPGHRCKHKELSVF 107
           T    T+ + T      + P  RR  D +LQ ++ +GLCYRCD+ FS GHRCK++EL + 
Sbjct: 268 TSNSNTSQSHTVGGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELKLC 327

Query: 106 VVQDDI 89
           VV DD+
Sbjct: 328 VVADDL 333


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