BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00043961
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...   132   3e-29
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   123   1e-26
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   122   2e-26
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,...   108   3e-22

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  135 bits (340), Expect = 3e-30
 Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 2/123 (1%)
 Frame = +2

Query: 17  PYITFNLQNFCH--RKKLRHRSIFVVISCSSTKDIWRKTPKSTTLRPSSFLQPYRRKPEV 190
           P+I++   N      K  +HR+ F+++S    KD+WR+ P  TT   SS  Q   RK  V
Sbjct: 26  PHISYIKTNIFSPFNKTQKHRACFILVSVF--KDVWRRLPDETTSLLSSSRQHRPRKQRV 83

Query: 191 GYLDHSIDMDELVSSINQTTNEQELFALLSPYKSRQLSIRFMVTVLSRETDWQRSLALLD 370
            +LDHS+DMDEL++SI+QT+NEQEL++L+SPYK RQLSIRFMV++LSRE DWQRSLALLD
Sbjct: 84  VHLDHSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLD 143

Query: 371 WIN 379
           WIN
Sbjct: 144 WIN 146


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
           gi|449530101|ref|XP_004172035.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  132 bits (332), Expect = 3e-29
 Identities = 72/136 (52%), Positives = 98/136 (72%), Gaps = 11/136 (8%)
 Frame = +2

Query: 5   TSSIPYITFNLQNF----CHRKKLRHRS---IFVVISCSSTKDIWRK-TPK---STTLRP 151
           +SSIP      +N+     ++ K++ R+   IF   S S++KDIWR+ TP    +TTL P
Sbjct: 15  SSSIPLFLIETRNYPKVRFNKIKIKPRTRIPIFTASSSSTSKDIWRRQTPSEKSTTTLLP 74

Query: 152 SSFLQPYRRKPEVGYLDHSIDMDELVSSINQTTNEQELFALLSPYKSRQLSIRFMVTVLS 331
             + +  RR  E  +LDHSIDMDEL++SI QT NEQEL+++LSPYK R+LS+RFMV++LS
Sbjct: 75  QKYQRSGRRPRESSHLDHSIDMDELLASIGQTKNEQELYSVLSPYKGRELSMRFMVSLLS 134

Query: 332 RETDWQRSLALLDWIN 379
           RE+DWQRSLA+LDWIN
Sbjct: 135 RESDWQRSLAILDWIN 150


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score =  123 bits (309), Expect = 1e-26
 Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
 Frame = +2

Query: 8   SSIPYITFNLQNFCHRKKLRHRSIFVVISCSST------KDIWRKTPKSTTLRPSSFLQP 169
           +SIP+ T          + R R++   +S SS+      K +WRK P+  T      L+ 
Sbjct: 25  TSIPFSTI--------PEARQRNLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRK 76

Query: 170 YRRKPEVGYLDHSIDMDELVSSINQTTNEQELFALLSPYKSRQLSIRFMVTVLSRETDWQ 349
           +RR     +LDH++DMDEL++SI+QT NE+ELF+LLS YK RQLSIRFMV++LSRE DWQ
Sbjct: 77  HRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQ 136

Query: 350 RSLALLDWIN 379
           RSLALLDW++
Sbjct: 137 RSLALLDWVH 146


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/113 (53%), Positives = 80/113 (70%), Gaps = 8/113 (7%)
 Frame = +2

Query: 65  RHRSIFVVISCSS--------TKDIWRKTPKSTTLRPSSFLQPYRRKPEVGYLDHSIDMD 220
           R R++   +S SS        TK +WRK P+  T      L+ +RR     +LDH++DMD
Sbjct: 36  RQRNLIFKVSASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMD 95

Query: 221 ELVSSINQTTNEQELFALLSPYKSRQLSIRFMVTVLSRETDWQRSLALLDWIN 379
           EL++SI+QT NE+ELF+LLS YK RQLSIRFMV++LSRE DWQRSLALLDW++
Sbjct: 96  ELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVH 148


>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  108 bits (271), Expect = 3e-22
 Identities = 58/101 (57%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
 Frame = +2

Query: 80  FVVISCSSTK-DIWRKTPKSTTLRPSSFLQPYRRKPEVGYLDHSIDMDELVSSINQTTNE 256
           F+++S S+TK D+W +T K+T   PS             YLDHS+DM +L+ SI+QT NE
Sbjct: 41  FLLLSSSATKRDMWTRTQKTT---PS-------------YLDHSVDMKQLLISISQTQNE 84

Query: 257 QELFALLSPYKSRQLSIRFMVTVLSRETDWQRSLALLDWIN 379
            EL++LLSPYK RQLSIRFMV+++S+E DWQRSLALLDWIN
Sbjct: 85  VELYSLLSPYKERQLSIRFMVSLISQEADWQRSLALLDWIN 125