BLASTX nr result

ID: Atractylodes22_contig00043161 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00043161
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33632.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   119   3e-25
ref|XP_003597658.1| Chloroplastic group IIA intron splicing faci...   116   2e-24
ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|2...   114   1e-23
ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron sp...   113   1e-23

>emb|CBI33632.3| unnamed protein product [Vitis vinifera]
          Length = 529

 Score =  119 bits (297), Expect = 3e-25
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +1

Query: 28  ETMAVQGSLYEREADRLLDGLGPRFVDWWMPKPLPVDADMLPELVPGYKPPSRLCPMNAT 207
           ++  V GSLYEREADRLLDGLGPRF+DWW PKPLPVDAD+LPE++PG++PP RL P    
Sbjct: 61  DSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTR 120

Query: 208 PKLTDDELTHLR 243
            KLTDDELT+LR
Sbjct: 121 SKLTDDELTYLR 132


>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  119 bits (297), Expect = 3e-25
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +1

Query: 28  ETMAVQGSLYEREADRLLDGLGPRFVDWWMPKPLPVDADMLPELVPGYKPPSRLCPMNAT 207
           ++  V GSLYEREADRLLDGLGPRF+DWW PKPLPVDAD+LPE++PG++PP RL P    
Sbjct: 360 DSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTR 419

Query: 208 PKLTDDELTHLR 243
            KLTDDELT+LR
Sbjct: 420 SKLTDDELTYLR 431


>ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
           truncatula] gi|355486706|gb|AES67909.1| Chloroplastic
           group IIA intron splicing facilitator CRS1 [Medicago
           truncatula]
          Length = 880

 Score =  116 bits (290), Expect = 2e-24
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +1

Query: 46  GSLYEREADRLLDGLGPRFVDWWMPKPLPVDADMLPELVPGYKPPSRLCPMNATPKLTDD 225
           GSLYERE DRLLDGLGPRF+DWWM KPLPVDAD+LPE+VPG++PP R+CP +A+ KLTD 
Sbjct: 393 GSLYERECDRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDG 452

Query: 226 ELTHLR 243
           ELT+ R
Sbjct: 453 ELTYFR 458


>ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|222870750|gb|EEF07881.1|
           predicted protein [Populus trichocarpa]
          Length = 687

 Score =  114 bits (284), Expect = 1e-23
 Identities = 51/71 (71%), Positives = 58/71 (81%)
 Frame = +1

Query: 31  TMAVQGSLYEREADRLLDGLGPRFVDWWMPKPLPVDADMLPELVPGYKPPSRLCPMNATP 210
           T  + GSL+ERE DRLLDGLGPRFVDWWM KPLPVDAD+LPE+V G++ PSRLCP     
Sbjct: 245 TQPINGSLFERETDRLLDGLGPRFVDWWMRKPLPVDADLLPEVVKGFRSPSRLCPPRMRS 304

Query: 211 KLTDDELTHLR 243
           KL DDELT+LR
Sbjct: 305 KLKDDELTYLR 315


>ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Glycine max]
          Length = 712

 Score =  113 bits (283), Expect = 1e-23
 Identities = 50/68 (73%), Positives = 59/68 (86%)
 Frame = +1

Query: 40  VQGSLYEREADRLLDGLGPRFVDWWMPKPLPVDADMLPELVPGYKPPSRLCPMNATPKLT 219
           V GSLYERE +RLLDGLGPRF+DWWM KPLPVDAD+LPE VPG++PP RLCP +++ KLT
Sbjct: 286 VNGSLYERETERLLDGLGPRFIDWWMHKPLPVDADLLPEEVPGFQPPFRLCPPHSSAKLT 345

Query: 220 DDELTHLR 243
           D ELT+ R
Sbjct: 346 DYELTYFR 353


Top