BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00042976
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    63   2e-08
dbj|BAA22288.1| polyprotein [Oryza australiensis]                      56   4e-06
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...    55   8e-06

>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = -1

Query: 313 CLYVPSISRNIVYFARLSDTGFKFKFSNRTIHAFLNDVLYFVTWPNNGIYEIDLHDNYES 134
           C YVP++SRNI+  + L   G+KF   +     FLND+ Y      NG++ ++L D    
Sbjct: 451 CYYVPAMSRNIISASCLMTEGYKFIIEDHGCSIFLNDMFYGYAPVLNGLFILNLDD--AP 508

Query: 133 MYNVNTKKLK-MSFSKTYVWHCCLG 62
           ++N+N K+L+  + + T++WHC LG
Sbjct: 509 IFNINAKRLRPNNMNSTFIWHCRLG 533


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = -1

Query: 313 CLYVPSISRNIVYFARLSDTGFKFKFSNRTIHAFLNDVLYFVTWPNNGIYEIDLHDNYES 134
           C  VP++ +N++  + L   G+ F+  N     +L D+ YF     NG+Y ++L  +   
Sbjct: 363 CYCVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEAS--P 420

Query: 133 MYNVNT-KKLKMSFSKTYVWHCCLG 62
           +YN+NT ++L    + T++WHC LG
Sbjct: 421 IYNINTERQLSNDINPTFIWHCRLG 445


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = -1

Query: 319 RECLYVPSISRNIVYFARLSDTGFKFKFSNRTIHAFLNDVLYFVTWPNNGIYEIDLHDNY 140
           + C YVP+I++NI+  + L   GF F   N+      +D+ Y     +NG++ +   +  
Sbjct: 6   KNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVL---NQS 62

Query: 139 ESMYNVNTKKLKMS-FSKTYVWHCCLG 62
             +YN+ TKK K +  + T++WHC LG
Sbjct: 63  MPIYNIRTKKFKSNDLNPTFLWHCRLG 89