BLASTX nr result

ID: Atractylodes22_contig00042946 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00042946
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273412.2| PREDICTED: LOW QUALITY PROTEIN: WD repeat an...   120   2e-25
emb|CBI15364.3| unnamed protein product [Vitis vinifera]              120   2e-25
ref|XP_002517706.1| WD-repeat protein, putative [Ricinus communi...   100   1e-19
ref|XP_004138211.1| PREDICTED: WD repeat and HMG-box DNA-binding...    98   8e-19
ref|XP_002317959.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18

>ref|XP_002273412.2| PREDICTED: LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding
           protein 1-like [Vitis vinifera]
          Length = 965

 Score =  120 bits (300), Expect = 2e-25
 Identities = 64/95 (67%), Positives = 74/95 (77%)
 Frame = +2

Query: 2   VPSSMKSPTEGVPTLSSKRSDGLLFFDEEEQEPSTSGSISDHGEDSLVSSEPPTRKRLRK 181
           VPSSMKSPTE VP+L SK S+GLL FDE+EQEPS SGS+SD GEDS   SEPP+RKRLRK
Sbjct: 309 VPSSMKSPTEDVPSLQSKNSNGLLLFDEDEQEPSASGSLSDLGEDSHGESEPPSRKRLRK 368

Query: 182 HFKYDEDSDEDINDGTSLLPKVESRKKPSVAGRES 286
              YDED ++D+    S LPKVESRKK S + +ES
Sbjct: 369 QSTYDEDINDDL---LSSLPKVESRKKASHSHKES 400


>emb|CBI15364.3| unnamed protein product [Vitis vinifera]
          Length = 1427

 Score =  120 bits (300), Expect = 2e-25
 Identities = 64/95 (67%), Positives = 74/95 (77%)
 Frame = +2

Query: 2   VPSSMKSPTEGVPTLSSKRSDGLLFFDEEEQEPSTSGSISDHGEDSLVSSEPPTRKRLRK 181
           VPSSMKSPTE VP+L SK S+GLL FDE+EQEPS SGS+SD GEDS   SEPP+RKRLRK
Sbjct: 270 VPSSMKSPTEDVPSLQSKNSNGLLLFDEDEQEPSASGSLSDLGEDSHGESEPPSRKRLRK 329

Query: 182 HFKYDEDSDEDINDGTSLLPKVESRKKPSVAGRES 286
              YDED ++D+    S LPKVESRKK S + +ES
Sbjct: 330 QSTYDEDINDDL---LSSLPKVESRKKASHSHKES 361


>ref|XP_002517706.1| WD-repeat protein, putative [Ricinus communis]
           gi|223543104|gb|EEF44638.1| WD-repeat protein, putative
           [Ricinus communis]
          Length = 775

 Score =  100 bits (250), Expect = 1e-19
 Identities = 54/97 (55%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   VPSSMKSPTEGVPTLSSKRSDGLLFFDEEE-QEPSTSGSISDHGEDSLVSSEPPTRKRLR 178
           VPSSMKSPT+ +P L S+ ++GLL F+EEE  EPS SGS+SD GE     SEPP+RKRLR
Sbjct: 311 VPSSMKSPTDDIPNLQSRNNNGLLLFEEEEDDEPSISGSLSDLGE-----SEPPSRKRLR 365

Query: 179 KHFKYDED-SDEDINDGTSLLPKVESRKKPSVAGRES 286
           KH ++DE+ + E IND  +L PK+E RKK    G+++
Sbjct: 366 KHSEFDEEGAREHINDELNLFPKIEPRKKVHRVGKDN 402


>ref|XP_004138211.1| PREDICTED: WD repeat and HMG-box DNA-binding protein 1-like
           [Cucumis sativus] gi|449477125|ref|XP_004154937.1|
           PREDICTED: WD repeat and HMG-box DNA-binding protein
           1-like [Cucumis sativus]
          Length = 962

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 51/86 (59%), Positives = 61/86 (70%)
 Frame = +2

Query: 2   VPSSMKSPTEGVPTLSSKRSDGLLFFDEEEQEPSTSGSISDHGEDSLVSSEPPTRKRLRK 181
           VPSSMK PTE +P L S+ S+GLL FDEE++EPS   + SD GEDS   SE PTRKRLRK
Sbjct: 311 VPSSMKPPTEDIPKLQSRNSNGLLLFDEEDEEPSAHENSSDLGEDSYHESEIPTRKRLRK 370

Query: 182 HFKYDEDSDEDINDGTSLLPKVESRK 259
           H   DE  DE  ++  SL PK++SRK
Sbjct: 371 HSTNDEILDEVDSEDFSLFPKLDSRK 396


>ref|XP_002317959.1| predicted protein [Populus trichocarpa] gi|222858632|gb|EEE96179.1|
           predicted protein [Populus trichocarpa]
          Length = 534

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 55/95 (57%), Positives = 69/95 (72%)
 Frame = +2

Query: 2   VPSSMKSPTEGVPTLSSKRSDGLLFFDEEEQEPSTSGSISDHGEDSLVSSEPPTRKRLRK 181
           VPSSMKSPTE +P+L  K  +G+L FDE+  EPS SG +S+ GEDSL  SEP +RKRLRK
Sbjct: 193 VPSSMKSPTEDIPSL--KNINGVLLFDEDP-EPSISGGLSEFGEDSLGESEPCSRKRLRK 249

Query: 182 HFKYDEDSDEDINDGTSLLPKVESRKKPSVAGRES 286
             ++ ED DEDI+D  SLLPK E RKK   A +++
Sbjct: 250 QSEF-EDPDEDIDDELSLLPKTEPRKKVHRASKDN 283


Top