BLASTX nr result

ID: Atractylodes22_contig00040633 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00040633
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78296.1| hypothetical protein VITISV_004661 [Vitis vinifera]    75   7e-12
ref|XP_002529050.1| nucleic acid binding protein, putative [Rici...    64   1e-08
ref|XP_004140330.1| PREDICTED: uncharacterized protein LOC101220...    59   5e-07
ref|XP_002302254.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_002284394.2| PREDICTED: uncharacterized protein LOC100257...    55   5e-06

>emb|CAN78296.1| hypothetical protein VITISV_004661 [Vitis vinifera]
          Length = 272

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 58/135 (42%), Positives = 71/135 (52%), Gaps = 25/135 (18%)
 Frame = -3

Query: 382 RNMVDGNEQL-LYG-----------------RDPNWSICRIIQSGFQAAH-KKTGIWLST 260
           R +VDGNE L  YG                 +D    +CRIIQSGF   + KK GI LS 
Sbjct: 137 RCVVDGNELLQFYGTQMNCCSQKLNRVIELCKDFTCQVCRIIQSGFDTEYGKKYGIALS- 195

Query: 259 SCQDFIS--TXXXXXXXXXXXXXMVCRVIAGRVIDMFEKNYEGDYDSI--AGV--KPNYL 98
           SC    S  T             +VCR+IAGRV++M ++  E  YDSI   G+  K  YL
Sbjct: 196 SCSTTSSGNTPAIYKGANAKRAVIVCRIIAGRVVNMVDRESEDRYDSIRVGGLYSKLEYL 255

Query: 97  FVKNPSAILPCFVIV 53
            V+NPSA+LPCFVIV
Sbjct: 256 IVRNPSAVLPCFVIV 270


>ref|XP_002529050.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223531530|gb|EEF33361.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 209

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
 Frame = -3

Query: 382 RNMVDGNEQL-LYG-----------------RDPNWSICRIIQSGFQAAH-KKTGIWLST 260
           R+ VDGNE L  YG                 RDP   +CR++QS F     KK GI LST
Sbjct: 76  RSTVDGNELLRFYGTTMSCCGERSMRVSELCRDPTCRVCRMVQSNFDTEFTKKNGIRLST 135

Query: 259 SCQDFISTXXXXXXXXXXXXXMVCRVIAGRVIDMFEKNYEGDYDSIAGV----KPNYLFV 92
           + ++                 +VCR+IAG V +  +   + + D I        P  L V
Sbjct: 136 NSEELTDHMIVFSKGKTERAVLVCRIIAGAVANRVDGG-KAECDCIESEAQHSNPKSLIV 194

Query: 91  KNPSAILPCFVIV 53
           +NPSAILPCFVIV
Sbjct: 195 RNPSAILPCFVIV 207


>ref|XP_004140330.1| PREDICTED: uncharacterized protein LOC101220433 [Cucumis sativus]
           gi|449502470|ref|XP_004161649.1| PREDICTED:
           uncharacterized protein LOC101227125 [Cucumis sativus]
          Length = 427

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
 Frame = -3

Query: 337 PNWSICRIIQSGFQAAHKKTG-------IWLSTSCQDFISTXXXXXXXXXXXXXMVCRVI 179
           P  ++C II++GF+ A + TG       +  +TS +   S              +VCRVI
Sbjct: 318 PQCNVCSIIKNGFKMAAEATGGDAGKGILTTATSGKAHDSVGVSSDGGNNKRAMLVCRVI 377

Query: 178 AGRVIDMFEKNYEGDYDSIAGVKPNY-----LFVKNPSAILPCFVIV 53
           AGRV    E + E DYDS+AG    Y     L+V +P AILPCFV++
Sbjct: 378 AGRVKKSSEGSME-DYDSLAGAAGMYSNLDELYVFSPKAILPCFVVI 423


>ref|XP_002302254.1| predicted protein [Populus trichocarpa] gi|222843980|gb|EEE81527.1|
           predicted protein [Populus trichocarpa]
          Length = 342

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 40/107 (37%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
 Frame = -3

Query: 337 PNWSICRIIQSGFQA-------AHKKTGIWLSTSCQDFISTXXXXXXXXXXXXXMVCRVI 179
           PN  +C II++GF+         H       S    D  +T             +VCRVI
Sbjct: 235 PNCKVCSIIKNGFKDPTGGDDNGHGILTTATSGKAHDKATTLEDGNGDSEKRAMLVCRVI 294

Query: 178 AGRVIDMFEKNYEGDYDSIAGVKPNY-----LFVKNPSAILPCFVIV 53
           AGRV    E N E DYDS+A     Y     L+V NP AILPCFV++
Sbjct: 295 AGRVKKSMEGNIE-DYDSVAAGMEVYSNLDELYVFNPRAILPCFVVI 340


>ref|XP_002284394.2| PREDICTED: uncharacterized protein LOC100257501 [Vitis vinifera]
          Length = 420

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
 Frame = -3

Query: 337 PNWSICRIIQSGFQAAHKKTG---IWLSTSCQDFISTXXXXXXXXXXXXXMVCRVIAGRV 167
           P+ SIC II++GF+ A    G   +  +TS +   S+             +VCRVIAGRV
Sbjct: 310 PSCSICSIIKNGFKVAGGVPGKGILTTATSGKAHDSSRMSLPDDNEKRAMLVCRVIAGRV 369

Query: 166 IDMFEKNYEG----DYDSIAGVKPNY-----LFVKNPSAILPCFVIV 53
                +   G    ++DS+AGV   Y     L+V NP AILPCFV++
Sbjct: 370 KKSATQLEGGVCTEEFDSVAGVGGVYSNLDELYVSNPKAILPCFVVI 416


Top