BLASTX nr result

ID: Atractylodes22_contig00039434 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00039434
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547155.1| PREDICTED: zinc finger CCCH domain-containin...    58   7e-07
ref|XP_002329830.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_003541728.1| PREDICTED: zinc finger CCCH domain-containin...    55   5e-06

>ref|XP_003547155.1| PREDICTED: zinc finger CCCH domain-containing protein 27-like
           [Glycine max]
          Length = 713

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +3

Query: 33  SPFSGSESEH--LYCNNDVPLLSTGFAKKISTYDWEPSKPFRSSFLL-SQGISSLGS--D 197
           S FSGS  E   L  ++ VP    G+  KI +YDWEPS PFR SF + S  +SS G   D
Sbjct: 416 STFSGSGREDFSLVSSSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYD 475

Query: 198 LIRDSIGQPKIGD 236
            +RDSI  P IGD
Sbjct: 476 PLRDSIEIPNIGD 488


>ref|XP_002329830.1| predicted protein [Populus trichocarpa] gi|222870892|gb|EEF08023.1|
           predicted protein [Populus trichocarpa]
          Length = 669

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
 Frame = +3

Query: 15  TLRPNISPFSGSESEHLYCNNDVP---LLSTGFAKKISTYDWEPSKPFRSSFLLS-QGIS 182
           +L  + S FSGSE E L   + VP   L       KIS+ DWEPS PFR SF ++ + IS
Sbjct: 359 SLLQSASAFSGSEPESLSLAS-VPGDQLRHAEHKTKISSNDWEPSVPFRPSFFITPEMIS 417

Query: 183 SLGS--DLIRDSIGQPKIGDK-FXXXXXXXXXXXXXXXXXLINVDPPPTETFGMDYGSDR 353
           S GS  D +RDS   P +GDK F                  I  D      FG ++  D+
Sbjct: 418 SAGSKYDPLRDSFVLPNVGDKSFKFSFFSLGASISNTSQQPIYGDSLSNRNFGTEFNGDK 477

Query: 354 LSLASH 371
            +++SH
Sbjct: 478 STISSH 483


>ref|XP_003541728.1| PREDICTED: zinc finger CCCH domain-containing protein 27-like
           [Glycine max]
          Length = 521

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/68 (48%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +3

Query: 42  SGSESEHLYCNNDVPLLSTGFAKKISTYDWEPSKPFRSSFLL-SQGISSLGS--DLIRDS 212
           SG E   L   + VP    G+  KI +YDWEPS PFR SF + S  +SS G   D +RDS
Sbjct: 411 SGREDFSLVNLSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDS 470

Query: 213 IGQPKIGD 236
           I  P IGD
Sbjct: 471 IEIPNIGD 478


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