BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00039079
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...    55   8e-06

>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/63 (38%), Positives = 39/63 (61%)
 Frame = +2

Query: 29  LAPDQNTQDTLLRGDSKNGLYVLPSINQPETHFGERTSISQWHSCLGHASLRLVQHILSK 208
           L  D+ T+ T+L+G  ++GLY LPS +  +  F    S+ +WHS LGH S+ +V  ++S 
Sbjct: 310 LIKDRTTRSTVLKGPRRHGLYPLPSTSSTKQAFAVAPSLERWHSRLGHPSIPIVMKVISS 369

Query: 209 HSL 217
           + L
Sbjct: 370 NKL 372