BLASTX nr result
ID: Atractylodes22_contig00038294
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00038294
(530 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 72 2e-21
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 67 8e-19
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 69 2e-18
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 69 2e-18
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 68 5e-17
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 71.6 bits (174), Expect(2) = 2e-21
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +1
Query: 1 GFPLGQELAIDLILNSLPKSYD*FILNYHMNGLEKSISKLHSLLKTAERSIDSKLEQSKS 180
GFPL QELA D+IL SLP S++ FILNYHMN +++++++LH +LKT E SI Q
Sbjct: 152 GFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESI-----QKNG 206
Query: 181 KQVLMLK 201
V+M++
Sbjct: 207 HHVMMMQ 213
Score = 55.8 bits (133), Expect(2) = 2e-21
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +2
Query: 311 DTVCFHCNK-GHWKRNCPTXXXXXXXXXXXXXRKGMFTID--LFTSSRDSRVLDTGCGTH 481
D VCF+C + GHWKRNC G+ ID L TS DS V DTG H
Sbjct: 252 DAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSVAH 311
Query: 482 ICTSIQGLRSREHLK 526
C S+QG+R L+
Sbjct: 312 SCKSLQGMRRSRGLR 326
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 66.6 bits (161), Expect(2) = 8e-19
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +1
Query: 1 GFPLGQELAIDLILNSLPKSYD*FILNYHMNGLEKSISKLHSLLKTAERSIDSKLEQSKS 180
GFPL QELA DLIL SLP S++ FILN++MN + ++++KL +LKTAE SI + S
Sbjct: 151 GFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRTLTKLPGMLKTAEESI-----KKNS 205
Query: 181 KQVLMLKVE*PKQSCQG 231
V+++ P G
Sbjct: 206 NHVMVMHKRKPNNKKSG 222
Score = 52.0 bits (123), Expect(2) = 8e-19
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 308 EDTVCFHCNK-GHWKRNCPTXXXXXXXXXXXXXRK----GMFTIDLFTSSRDSRVLDTGC 472
+D CF C + GHWKRNC + I+L TSS DS V DTG
Sbjct: 225 KDAECFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGS 284
Query: 473 GTHICTSIQGLRSREHL 523
HIC S+QGL+ L
Sbjct: 285 VAHICKSLQGLKRSRSL 301
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 69.3 bits (168), Expect(2) = 2e-18
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +1
Query: 1 GFPLGQELAIDLILNSLPKSYD*FILNYHMNGLEKSISKLHSLLKTAERSIDSKLEQSKS 180
GFPL +ELA DLIL SLP S++ FI+N++MN L +++++LH +LKTAE SI + S
Sbjct: 243 GFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESI-----KKNS 297
Query: 181 KQVLMLKVE*PKQSCQGQ 234
V+++ P GQ
Sbjct: 298 NHVMVMHKRKPNNKKSGQ 315
Score = 47.8 bits (112), Expect(2) = 2e-18
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 308 EDTVCFHCNK-GHWKRNCPTXXXXXXXXXXXXXRK----GMFTIDLFTSSRDSRVLDTGC 472
+D CF + GHWKRNC + I+L TSS DS V DTG
Sbjct: 341 KDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGS 400
Query: 473 GTHICTSIQGLRSREHL 523
HIC S+QGL+ L
Sbjct: 401 VAHICKSLQGLKRSRSL 417
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 69.3 bits (168), Expect(2) = 2e-18
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +1
Query: 1 GFPLGQELAIDLILNSLPKSYD*FILNYHMNGLEKSISKLHSLLKTAERSIDSKLEQSKS 180
GFPL +ELA DLIL SLP S++ FI+N++MN L +++++LH +LKTAE SI + S
Sbjct: 243 GFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESI-----KKNS 297
Query: 181 KQVLMLKVE*PKQSCQGQ 234
V+++ P GQ
Sbjct: 298 NHVMVMHKRKPNNKKSGQ 315
Score = 47.8 bits (112), Expect(2) = 2e-18
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 308 EDTVCFHCNK-GHWKRNCPTXXXXXXXXXXXXXRK----GMFTIDLFTSSRDSRVLDTGC 472
+D CF + GHWKRNC + I+L TSS DS V DTG
Sbjct: 341 KDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGS 400
Query: 473 GTHICTSIQGLRSREHL 523
HIC S+QGL+ L
Sbjct: 401 VAHICKSLQGLKRSRSL 417
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 67.8 bits (164), Expect(2) = 5e-17
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +1
Query: 1 GFPLGQELAIDLILNSLPKSYD*FILNYHMNGLEKSISKLHSLLKTAERSIDSKLEQSKS 180
GFPL +EL DLIL SLP S++ FI+N++MN L +++++LH +LKTAE SI + S
Sbjct: 203 GFPLNRELVTDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESI-----KKNS 257
Query: 181 KQVLMLKVE*PKQSCQGQ 234
V+++ P GQ
Sbjct: 258 NHVMVMHKRKPNNKKSGQ 275
Score = 44.7 bits (104), Expect(2) = 5e-17
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 308 EDTVCFHCNK-GHWKRNCPTXXXXXXXXXXXXXRK----GMFTIDLFTSSRDSRVLDTGC 472
+D CF C + GHWKRN + I+L TSS DS V DT
Sbjct: 301 KDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTES 360
Query: 473 GTHICTSIQGLRSREHL 523
HIC S+QGL+ L
Sbjct: 361 VAHICKSLQGLKRSRSL 377