BLASTX nr result

ID: Atractylodes22_contig00037483 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00037483
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...    61   1e-07
ref|XP_002337334.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
 Frame = +1

Query: 52  MSTAMFLSPTMLSNALNFPKKIHSS--------NPQIPHNSFSVP------APETHEKNH 189
           MS A+FLS + + N   FP   +S         NPQ  H SF  P         T+  +H
Sbjct: 1   MSPALFLSLSPIPNHSQFPSNSNSLSNSSIRILNPQRIH-SFKPPPISATTTATTNHPDH 59

Query: 190 EFKPNP---SNSATK--TAPWMKGPLVLEPNQVVDFSKPKNRKKASDDKDEKAGKSL 345
                P   +++A K  TAPWMKGPL+L+PN+V+D SK + +K A     EK  +SL
Sbjct: 60  SISSQPVSGTDAAIKMPTAPWMKGPLLLQPNEVLDLSKARPKKVAGSAGAEKPDRSL 116


>ref|XP_002337334.1| predicted protein [Populus trichocarpa] gi|222838796|gb|EEE77147.1|
           predicted protein [Populus trichocarpa]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
 Frame = +1

Query: 40  ATITMSTAMFLSPTMLSNALNFPKKIHSS----NPQIPHNSFSVPAPETHEKNHEFKPNP 207
           A+  +    F S T +++ALN   K H +    N QI   SF        E      P  
Sbjct: 2   ASSALCLKFFSSYTPITSALNPTTKKHGNTTLNNAQITTPSFMFANNNNKELAVLTNPIS 61

Query: 208 SNSATK-----TAPWMKGPLVLEPNQVVDFSKPKNRKKASDDKDEKAGKSL 345
            ++AT      T PW+KGPL+L+P+++++ + PKN+K   +DK EK  K+L
Sbjct: 62  QSNATTNVKVPTPPWIKGPLILQPHELLNLTNPKNKKPIKNDKIEKDDKAL 112


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