BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00037311
         (1068 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   119   1e-24
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [...   119   1e-24
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha...   115   1e-23
dbj|BAD44345.1| retrotransposon like protein [Arabidopsis thaliana]   115   1e-23
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         115   2e-23

>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  119 bits (299), Expect = 1e-24
 Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 7/224 (3%)
 Frame = -2

Query: 761 NVKNFVTTVLTIAEDYLPWRTQFESFLVSHDLLGMVDGSIAIP--TYYVSD--GHYYQDV 594
           N+ N VT  LT A++Y+ W++QFESFL    LLG V GSI  P  T  VSD  G      
Sbjct: 10  NISNCVTVTLT-AKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASP 68

Query: 593 NLDYYHWFRVDQHVRSWIFATLSKETMIDVHDLQFSSKIWE*LQVHFMSASLAISMELKR 414
           N +YY WF+ D+ V+SW+  +  ++ +  V +   S ++W  +  HF   S +   EL+R
Sbjct: 69  NPEYYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQR 128

Query: 413 SLSMVTKSKAQSMEEYLRNIKMIANSLAAINSPFTSQDLIQHTIMGLGAEYESVITAITH 234
            L  V+K + +SM+EYL+++K I + LA++ SP T +  I   + GLG EYE + T I +
Sbjct: 129 RLQNVSK-RDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIEN 187

Query: 233 FPGAI---TFDELRAKLLIQEQRVKHLRQQDLTNTTHQAFPTTT 111
              A+   + +++  KL   + R++   ++    + H AF  TT
Sbjct: 188 SMDALPGPSLEDVIPKLTGYDDRLQGYLEETAV-SPHVAFNITT 230


>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17104755|gb|AAL34266.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971701|dbj|BAD44515.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971723|dbj|BAD44526.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|110741320|dbj|BAF02210.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 405

 Score =  119 bits (299), Expect = 1e-24
 Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 7/224 (3%)
 Frame = -2

Query: 761 NVKNFVTTVLTIAEDYLPWRTQFESFLVSHDLLGMVDGSIAIP--TYYVSD--GHYYQDV 594
           N+ N VT  LT A++Y+ W++QFESFL    LLG V GSI  P  T  VSD  G      
Sbjct: 20  NISNCVTVTLT-AKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASP 78

Query: 593 NLDYYHWFRVDQHVRSWIFATLSKETMIDVHDLQFSSKIWE*LQVHFMSASLAISMELKR 414
           N +YY WF+ D+ V+SW+  +  ++ +  V +   S ++W  +  HF   S +   EL+R
Sbjct: 79  NPEYYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQR 138

Query: 413 SLSMVTKSKAQSMEEYLRNIKMIANSLAAINSPFTSQDLIQHTIMGLGAEYESVITAITH 234
            L  V+K + +SM+EYL+++K I + LA++ SP T +  I   + GLG EYE + T I +
Sbjct: 139 RLQNVSK-RDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIEN 197

Query: 233 FPGAI---TFDELRAKLLIQEQRVKHLRQQDLTNTTHQAFPTTT 111
              A+   + +++  KL   + R++   ++    + H AF  TT
Sbjct: 198 SMDALPGPSLEDVIPKLTGYDDRLQGYLEETAV-SPHVAFNITT 240


>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
          Length = 1392

 Score =  115 bits (289), Expect = 1e-23
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
 Frame = -2

Query: 791 LSASLAFSTTNVKNFVTTVLTIAEDYLPWRTQFESFLVSHDLLGMVDGSIAIPTYYV--- 621
           +  S+  S+ N+   VT  LT   +YL W+TQFES+L SH LLG V G+   P   +   
Sbjct: 1   MEESIFVSSLNISQVVTLKLT-PTNYLLWKTQFESYLSSHLLLGFVTGATPRPASTIIVT 59

Query: 620 SDGHYYQDVNLDYYHWFRVDQHVRSWIFATLSKETMIDVHDLQFSSKIWE*LQVHFMSAS 441
            D    ++ N ++  W R+DQ V++WIF +LS+E +  V  L  + ++W  L   F   S
Sbjct: 60  KDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFS 119

Query: 440 LAISMELKRSLSMVTKSKAQSMEEYLRNIKMIANSLAAINSPFTSQDLIQHTIMGLGAEY 261
                +L++ L   +K+  ++M+ YL  +K I + L +I  P T Q+ I   + GLG EY
Sbjct: 120 TTRKYDLQKRLGTCSKA-GKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKEY 178

Query: 260 ESVITAITH----FPGAITFDELRAKLLIQEQRVKHLRQQDLTNTTHQAFPT 117
           ES+ T I H    +PG   FD++  KL   + ++          T H AF T
Sbjct: 179 ESIATVIEHSLDVYPGP-CFDDVVYKLTTFDDKLSTYTANSEV-TPHLAFYT 228


>dbj|BAD44345.1| retrotransposon like protein [Arabidopsis thaliana]
          Length = 383

 Score =  115 bits (289), Expect = 1e-23
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
 Frame = -2

Query: 791 LSASLAFSTTNVKNFVTTVLTIAEDYLPWRTQFESFLVSHDLLGMVDGSIAIPTYYV--- 621
           +  S+  S+ N+   VT  LT   +YL W+TQFES+L SH LLG V G+   P   +   
Sbjct: 1   MEESIFVSSLNISQVVTLKLT-PTNYLLWKTQFESYLSSHLLLGFVTGATPRPASTIIVT 59

Query: 620 SDGHYYQDVNLDYYHWFRVDQHVRSWIFATLSKETMIDVHDLQFSSKIWE*LQVHFMSAS 441
            D    ++ N ++  W R+DQ V++WIF +LS+E +  V  L  + ++W  L   F   S
Sbjct: 60  KDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFS 119

Query: 440 LAISMELKRSLSMVTKSKAQSMEEYLRNIKMIANSLAAINSPFTSQDLIQHTIMGLGAEY 261
                +L++ L   +K+  ++M+ YL  +K I + L +I  P T Q+ I   + GLG EY
Sbjct: 120 TTRKYDLQKRLGTCSKA-GKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKEY 178

Query: 260 ESVITAITH----FPGAITFDELRAKLLIQEQRVKHLRQQDLTNTTHQAFPT 117
           ES+ T I H    +PG   FD++  KL   + ++          T H AF T
Sbjct: 179 ESIATVIEHSLDVYPGP-CFDDVVYKLTTFDDKLSTYTANSEV-TPHLAFYT 228


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  115 bits (288), Expect = 2e-23
 Identities = 88/252 (34%), Positives = 132/252 (52%), Gaps = 13/252 (5%)
 Frame = -2

Query: 719 DYLPWRTQFESFLVSHDLLGMVDGSIAIPTY---YVSDGHYYQDVNLDYYHWFRVDQHVR 549
           +YL W+TQFES L S  L+G V+G +  P      V+D    +  N  Y  WF  DQ VR
Sbjct: 25  NYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQYEDWFCTDQLVR 84

Query: 548 SWIFATLSKETMIDVHDLQFSSKIWE*LQVHFMSASLAISMELKRSLSMVTKSKAQSMEE 369
           SW+F TLS+E +  VH+L  S +IW  L  +F  +S+A    L+R+L ++TK K +S+  
Sbjct: 85  SWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQLLTK-KDKSLSV 143

Query: 368 YLRNIKMIANSLAAINSPFTSQDLIQHTIMGLGAEYESVITAI----THFPGAITFDELR 201
           Y R+ K+I +SL++I  P      I   + GLG EY+ + T I    +  P A TF+++ 
Sbjct: 144 YCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVIQSSLSKLP-APTFNDVI 202

Query: 200 AKLLIQEQRVKHLRQQDLTNTTHQAFPT--TTMGAPTSTSNPLRSXXXXXXXXNRSWCG- 30
           +++   + +++      ++   H AF T  +  GAP   SN             R   G 
Sbjct: 203 SEVQGFDSKLQSY-DDTVSVNPHLAFNTERSNSGAPQYNSN----------SRGRGRSGQ 251

Query: 29  NRGQGG---RGR 3
           NRG+GG   RGR
Sbjct: 252 NRGRGGYSTRGR 263