BLASTX nr result

ID: Atractylodes22_contig00036091 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00036091
         (681 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...    62   1e-07
ref|XP_003635354.1| PREDICTED: uncharacterized protein LOC100854...    59   1e-06
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    58   2e-06

>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
            finger, CCHC-type; Peptidase aspartic, active site;
            Polynucleotidyl transferase, Ribonuclease H fold
            [Medicago truncatula]
          Length = 1297

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +1

Query: 439  PEFDLDLADQVVPEAIRATRHINRYGDTILQWLIQWKGRSLEDATWEDAITIQSQFPEVG 618
            P+ + D    + PE +   R I   G+ I Q L+ W G+ +E+ATWED + I+SQFP   
Sbjct: 1195 PDLEEDKGVVIEPETVLTRRTIQVQGEKIDQVLVHWMGQKVEEATWEDTLIIRSQFPNFY 1254

Query: 619  LEDKTNFEGG 648
            LEDK    GG
Sbjct: 1255 LEDKAMLSGG 1264


>ref|XP_003635354.1| PREDICTED: uncharacterized protein LOC100854728 [Vitis vinifera]
          Length = 2807

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 30/74 (40%), Positives = 40/74 (54%)
 Frame = +1

Query: 439  PEFDLDLADQVVPEAIRATRHINRYGDTILQWLIQWKGRSLEDATWEDAITIQSQFPEVG 618
            P   + +   +VP AI A R I R G  + Q L+QW     E+ATWED +     +P+  
Sbjct: 1251 PTATMGIHPLLVPAAICAVRTILRQGKEVQQILVQWTASDPENATWEDFVAFCRLYPDYH 1310

Query: 619  LEDKTNFEGGPNDT 660
            LEDK +F G  NDT
Sbjct: 1311 LEDKVDFHGVGNDT 1324


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 38/71 (53%)
 Frame = +1

Query: 433  LPPEFDLDLADQVVPEAIRATRHINRYGDTILQWLIQWKGRSLEDATWEDAITIQSQFPE 612
            +PP  D+D+   V PE +   R I +   T  + LI+WKG    +ATWED   I  +FP 
Sbjct: 1528 IPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLIKWKGLPAFEATWEDMSPIHLRFPS 1587

Query: 613  VGLEDKTNFEG 645
              LEDK N  G
Sbjct: 1588 FHLEDKVNVWG 1598


Top