BLASTX nr result

ID: Atractylodes22_contig00034229 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00034229
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_068728.1| putative coat protein [Soybean chlorotic mottle...    84   3e-14
ref|NP_042512.1| hypothetical protein [Peanut chlorotic streak v...    62   9e-08
ref|NP_659396.1| hypothetical protein [Mirabilis mosaic virus] g...    58   2e-06
ref|NP_861409.1| putative capsid protein [Cestrum yellow leaf cu...    57   2e-06

>ref|NP_068728.1| putative coat protein [Soybean chlorotic mottle virus]
           gi|18266819|sp|P15627.2|CAPSD_SOCMV RecName: Full=Capsid
           protein; Short=CP; AltName: Full=Coat protein
           gi|11322952|emb|CAC16944.1| putative coat protein
           [Soybean chlorotic mottle virus]
          Length = 441

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 50/162 (30%), Positives = 68/162 (41%)
 Frame = +2

Query: 5   RILYLRQWLKMKCKELQTKREAKINLCCESQLGIIGNYRCXXXXXXXXXXXXXXXXXXXX 184
           RI  L+ W   +C +   KR+A + LCC      IG Y C                    
Sbjct: 286 RITALKLWQTEQCNQKLAKRQASVGLCCSKIEDKIGKYGCRKSNPRAKKPKKKFRKIKKY 345

Query: 185 XXXXXXXXXRNNDRKYFRNRRXXXXXXXXXXXXXXXXXXXXXXXWLCQEEGHYANECPKK 364
                        +K FR +R                       WLC EEGHYANECPKK
Sbjct: 346 PKKNFWKWNNQRKKKTFRKKRPFRKQQTCPTGKKKCQC------WLCHEEGHYANECPKK 399

Query: 365 GKRKETEILKIAYDLGYEPLEDSDVDKDIEIYAYTYASESKD 490
             +K  + LK+ +DLG+EP+E SD++ D E++  T    S+D
Sbjct: 400 DNKK-AQTLKLIFDLGFEPVE-SDIETDEELFELTSEDSSED 439


>ref|NP_042512.1| hypothetical protein [Peanut chlorotic streak virus]
           gi|555884|gb|AAA50239.1| putative major capsid protein
           [Peanut chlorotic streak virus]
          Length = 462

 Score = 62.0 bits (149), Expect = 9e-08
 Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
 Frame = +2

Query: 317 WLCQEEGHYANECP-KKGKRKETEILKIAYDLGYEPLE---DSDVDKDIEIYAYTYASES 484
           W+CQEEGHYANECP +K  +K+ + +++ Y +GYEP+E   ++D   D +IY+ T  ++S
Sbjct: 393 WICQEEGHYANECPNRKINQKKDKYVRMLYSVGYEPIEEDYETDESLDFDIYSLTSETDS 452

Query: 485 K 487
           +
Sbjct: 453 E 453


>ref|NP_659396.1| hypothetical protein [Mirabilis mosaic virus]
           gi|21427195|gb|AAM53127.1| ORFIV [Mirabilis mosaic
           virus]
          Length = 487

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +2

Query: 317 WLCQEEGHYANECPKKGKRKE-TEILKIAYDLGYEPLEDSDVDKDIEIYAYTYASESK 487
           W+C EEGHYANECP + K  E  +IL   Y   YEP+ED   +  + +Y+Y Y ++S+
Sbjct: 431 WICSEEGHYANECPNRSKNPERVKILIKGYQQDYEPVEDM-YEGTLHVYSYEYDTDSE 487


>ref|NP_861409.1| putative capsid protein [Cestrum yellow leaf curling virus]
           gi|81991105|sp|Q7TD09.1|CAPSD_CYLCV RecName: Full=Capsid
           protein; Short=CP; AltName: Full=coat protein
           gi|32305281|gb|AAP78923.1| putative capsid protein
           [Cestrum yellow leaf curling virus]
          Length = 501

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
 Frame = +2

Query: 317 WLCQEEGHYANECPKKGKRKETEILKI---AYDLGYEPLED--SDVDKDIEIYAYTYASE 481
           W+C EEGHYANECPKK K K  + +K+   A + G+EPLE   SD+++  EI      S 
Sbjct: 434 WICHEEGHYANECPKKTKEKHKDKVKLLMEAEEEGFEPLESEASDIEEIFEIVEEDSESS 493

Query: 482 SKD 490
           S++
Sbjct: 494 SEE 496


Top