BLASTX nr result
ID: Atractylodes22_contig00033948
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00033948
(359 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002333584.1| predicted protein [Populus trichocarpa] gi|2... 84 2e-21
ref|XP_002533336.1| pentatricopeptide repeat-containing protein,... 97 1e-18
gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygr... 65 2e-17
ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containi... 70 8e-17
ref|NP_180924.1| pentatricopeptide repeat-containing protein [Ar... 65 8e-17
>ref|XP_002333584.1| predicted protein [Populus trichocarpa] gi|222837528|gb|EEE75893.1|
predicted protein [Populus trichocarpa]
Length = 196
Score = 84.3 bits (207), Expect(2) = 2e-21
Identities = 40/68 (58%), Positives = 50/68 (73%)
Frame = +2
Query: 2 KGVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSV 181
KGVA + GQ+ H+ IVK+GYE NVY+GSAL+DMYA+C RV DA+ F MP RN +
Sbjct: 49 KGVARASRYDLGQKGHSLIVKIGYERNVYAGSALLDMYAECDRVEDAYDVFRGMPTRNFI 108
Query: 182 SWNALISG 205
SWNAL+ G
Sbjct: 109 SWNALLDG 116
Score = 43.1 bits (100), Expect(2) = 2e-21
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 277 SECGSIEDAQGVFDGAGNERDIVSWNA 357
+ECGS+EDA+ VFDGA RD+V+WN+
Sbjct: 136 NECGSLEDAETVFDGAVGTRDLVTWNS 162
>ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526827|gb|EEF29045.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/68 (70%), Positives = 55/68 (80%)
Frame = +2
Query: 2 KGVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSV 181
KGVA + L GQQVH+ IVKMGYEE+VY+GSAL+DMYAKC RV DA F C+P RNSV
Sbjct: 110 KGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSV 169
Query: 182 SWNALISG 205
SWNALI+G
Sbjct: 170 SWNALIAG 177
Score = 78.2 bits (191), Expect = 7e-13
Identities = 32/52 (61%), Positives = 45/52 (86%)
Frame = +1
Query: 202 RVHCTIIKHGMAFDSSVLNATISAYSECGSIEDAQGVFDGAGNERDIVSWNA 357
++HC IIKHG+ FD++V NATI++YS+CGS+EDA+ VFDGA RD+V+WN+
Sbjct: 224 QLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNS 275
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +2
Query: 35 GQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWNALI 199
GQQ+H VK G+E N + S+L+ MY+KCG + DA K F +S++WN+++
Sbjct: 424 GQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIM 478
>gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 62.0 bits (149), Expect(2) = 2e-17
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +2
Query: 2 KGVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSV 181
K SS CL G++V A I+ GYE + G+AL+ Y+K G + DA K F+ MP+R+ +
Sbjct: 696 KACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIM 755
Query: 182 SWNALISG 205
SWN +I+G
Sbjct: 756 SWNKMIAG 763
Score = 51.6 bits (122), Expect(2) = 2e-17
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Frame = +1
Query: 190 CSDF-------RVHCTIIKHGMAFDSSVLNATISAYSECGSIEDAQGVFDGAGNERDIVS 348
CS F RVH I+K M D V A IS Y++CGS+E+AQ VFD E+++V+
Sbjct: 799 CSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF-TEKNVVT 857
Query: 349 WNA 357
WNA
Sbjct: 858 WNA 860
Score = 65.1 bits (157), Expect = 6e-09
Identities = 28/69 (40%), Positives = 47/69 (68%)
Frame = +2
Query: 11 ASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWN 190
++S L AG+ +H+ I ++G+ +V G++L+ MYA+CG + A + FN MP R+ +SWN
Sbjct: 396 STSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWN 455
Query: 191 ALISGSTAR 217
A+I+G R
Sbjct: 456 AIIAGYARR 464
Score = 58.5 bits (140), Expect = 5e-07
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = +2
Query: 5 GVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVS 184
G + + L G+Q+H I++ G + +V G+AL++MY +CG + DA++ F+ + RN +S
Sbjct: 596 GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS 655
Query: 185 WNALISG 205
W A+I G
Sbjct: 656 WTAMIGG 662
Score = 57.8 bits (138), Expect = 9e-07
Identities = 27/64 (42%), Positives = 43/64 (67%)
Frame = +2
Query: 11 ASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWN 190
+S L G++VHA IVK + +V G+AL+ MYAKCG + +A + F+ ++N V+WN
Sbjct: 800 SSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWN 859
Query: 191 ALIS 202
A+I+
Sbjct: 860 AMIN 863
Score = 56.2 bits (134), Expect = 3e-06
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 26 LCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWNALIS 202
L +++HA +V+ G +++ + L++MY KC V DAH+ F MP R+ +SWN+LIS
Sbjct: 98 LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156
>ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product
[Vitis vinifera]
Length = 1048
Score = 66.2 bits (160), Expect(2) = 8e-17
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +2
Query: 8 VASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSW 187
+AS + L G VHA +K G NVY GS+L++MYAKC ++ A K F+ + +RN V W
Sbjct: 359 IASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLW 418
Query: 188 NALISG 205
NA++ G
Sbjct: 419 NAMLGG 424
Score = 45.4 bits (106), Expect(2) = 8e-17
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 184 MECSDF--RVHCTIIKHGMAFDSSVLNATISAYSECGSIEDAQGVFDGAGNERDIVSWNA 357
+EC + ++H IIKH ++ V N + Y++CG++E+A+ F+ N RD VSWNA
Sbjct: 463 LECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRN-RDNVSWNA 521
Score = 69.7 bits (169), Expect = 2e-10
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +2
Query: 5 GVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVS 184
G A+ L G+QVH +VK G + +Y+GS+L+DMY KCG + A F+CMP R+ VS
Sbjct: 560 GCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVS 619
Query: 185 WNALISG 205
NA+I+G
Sbjct: 620 MNAIIAG 626
Score = 69.3 bits (168), Expect = 3e-10
Identities = 28/57 (49%), Positives = 43/57 (75%)
Frame = +2
Query: 35 GQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWNALISG 205
G+QVH ++KMG+E N + +L+DMY+KCG +VDA K F+ + D ++VSW A+I+G
Sbjct: 201 GKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAG 257
Score = 64.7 bits (156), Expect = 7e-09
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = +2
Query: 11 ASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWN 190
A +CL G+Q+H+ I+K +E N++ + LVDMYAKCG + +A + F + +R++VSWN
Sbjct: 461 ACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWN 520
Query: 191 ALISG 205
A+I G
Sbjct: 521 AIIVG 525
>ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g33680 gi|1707007|gb|AAC69139.1| hypothetical protein
[Arabidopsis thaliana] gi|330253774|gb|AEC08868.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 727
Score = 65.5 bits (158), Expect(2) = 8e-17
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +2
Query: 35 GQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWNALISGSTA 214
G+Q+H+ ++K+G+E ++++ +ALVDMYAK G + DA K F+C+ +R+ W +LISG
Sbjct: 341 GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQ 400
Query: 215 RS*N 226
S N
Sbjct: 401 NSDN 404
Score = 46.2 bits (108), Expect(2) = 8e-17
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +1
Query: 202 RVHCTIIKHGMAFDSSVLNATISAYSECGSIEDAQGVFDGAGNERDIVSWNA 357
+VH IKHG + + +A + YS+CGS+ED VF N +D+VSWNA
Sbjct: 444 QVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN-KDVVSWNA 494
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 2 KGVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSV 181
K +S L G+QVH +K G+ V GSAL MY+KCG + D + F P+++ V
Sbjct: 431 KACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVV 490
Query: 182 SWNALISG 205
SWNA+ISG
Sbjct: 491 SWNAMISG 498
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +2
Query: 2 KGVASSDCLCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSV 181
K +S G+Q HA +VKM ++Y ++LV MY K G V D K F MP+RN+
Sbjct: 126 KAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTY 185
Query: 182 SWNALISGSTAR 217
+W+ ++SG R
Sbjct: 186 TWSTMVSGYATR 197
Score = 57.4 bits (137), Expect = 1e-06
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +2
Query: 26 LCAGQQVHASIVKMGYEENVYSGSALVDMYAKCGRVVDAHKCFNCMPDRNSVSWNALISG 205
L AG+ VH I++ G + + LV+ YAKCG++ AH FN + ++ VSWN+LI+G
Sbjct: 30 LVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITG 89