BLASTX nr result

ID: Atractylodes22_contig00033636 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00033636
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|2...    69   3e-10
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                68   7e-10
ref|NP_001175627.1| Os08g0476600 [Oryza sativa Japonica Group] g...    65   6e-09
gb|ABE77191.1| putative non-LTR retroelement reverse transcripta...    65   8e-09
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    62   6e-08

>ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|222874272|gb|EEF11403.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = -1

Query: 325 GRLNRNRIEAVENAQGEKFFGDE-VPIQFVAHFKNFLGTSEPVQSLRDP--DGLFTRRLC 155
           GR NRN++ ++    GE   G E V  + +A+F   LG  +  + L +   +     +L 
Sbjct: 344 GRHNRNKLLSLTREDGEVVEGHEAVKSEVIAYFHRVLGVDQMPRVLNEEVMESAINLKLS 403

Query: 154 RSDADYMVRQVEDKEIREALFDIADNKAPGPDGYSARFFKASWQIVGRDI 5
            +    + + V  KEI+ A+F + +NKAPG DG++A FFK  W IVG D+
Sbjct: 404 STQQHVLAQVVTRKEIKHAMFSLKNNKAPGLDGFNAGFFKRMWHIVGEDV 453


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
 Frame = -1

Query: 322 RLNRNRIEAVENAQGEKFFGDEVPIQFVAHFKNFLG------TSEPVQSLRDPDGLFTRR 161
           R  +N I+ +    G    GD++ ++    FK FL           V+ L+D   L   R
Sbjct: 31  RETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVRELQD---LLQFR 87

Query: 160 LCRSDADYMVRQVEDKEIREALFDIADNKAPGPDGYSARFFKASWQIVGRD 8
              SD + + R+V  +EI+  LF +  +K+PGPDGY++ F+KA+W I+G++
Sbjct: 88  CTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQE 138


>ref|NP_001175627.1| Os08g0476600 [Oryza sativa Japonica Group]
            gi|255678528|dbj|BAH94355.1| Os08g0476600 [Oryza sativa
            Japonica Group]
          Length = 1589

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = -1

Query: 325  GRLNRNRIEAVENAQGEKFFGDEVPIQFVAHF-KNFLGTSEPVQSLRDPDGLFTRRLCRS 149
            GR  + RI ++ N  GE   G +  ++F+A+F KN  G  E  +       L   +L   
Sbjct: 1150 GRKRKERIYSL-NKDGEVIAGQQELVKFIANFYKNLFGPPEETEVRLH--NLEMSQLSEQ 1206

Query: 148  DADYMVRQVEDKEIREALFDIADNKAPGPDGYSARFFKASWQIVGRDI 5
              D ++R    +E++E +F++ +NKAPGPDG+   F+KA W+I+  D+
Sbjct: 1207 QKDDLMRPFSMEELKEVVFEMENNKAPGPDGFPVDFYKAFWEIIKMDL 1254


>gb|ABE77191.1| putative non-LTR retroelement reverse transcriptase [Sorghum bicolor]
          Length = 1505

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 325  GRLNRNRIEAVENAQGEKFFGDEVPIQFVAHFKNFLGTSEPVQ-SLRDPDGLFTRRLCRS 149
            G+  +  I  +E+ QG     D +      ++K+  G  E ++ SLR+   L   ++   
Sbjct: 880  GKHRKQHIYRLEDTQGAVIGDDNLKTHITTYYKDLFGQLENLEISLREDHNLDIPQVSLE 939

Query: 148  DADYMVRQVEDKEIREALFDIADNKAPGPDGYSARFFKASWQIVGRDI 5
            + D ++    + E+REA+F +  NKAPGPDG+ A  ++  W+++  D+
Sbjct: 940  ENDILISPFTESEVREAIFQMEHNKAPGPDGFPAELYQVFWKVIKDDL 987


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/107 (28%), Positives = 59/107 (55%)
 Frame = -1

Query: 322  RLNRNRIEAVENAQGEKFFGDEVPIQFVAHFKNFLGTSEPVQSLRDPDGLFTRRLCRSDA 143
            R +RNRI+A+ +AQG + F D+   +   ++   L T+       +       ++     
Sbjct: 724  RKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMN 783

Query: 142  DYMVRQVEDKEIREALFDIADNKAPGPDGYSARFFKASWQIVGRDIC 2
              +++ V D+E+R+A+F I  ++APG DG++A F+   W ++G D+C
Sbjct: 784  HELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVC 830


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