BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00033177
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]         80   2e-13
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...    61   8e-08
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...    60   1e-07
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc...    60   2e-07
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]    60   2e-07

>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
 Frame = -3

Query: 436 ISERNLGTISELSDCSRITAS-----------HVSGSMSDFVEYQPVTR-KYVTSFDGRR 293
           ++   LG ++ LS  +RI A            HV G+   F+ Y PV +   V   DG R
Sbjct: 295 VANVGLGEVNMLSQYTRIVACRGWFLDSGATVHVCGNRGSFLTYAPVPQGTVVVCADGHR 354

Query: 292 SEVTGVEIVELRFFMGQKLTLKDVLHVPAVSKWLVSASKLVENGYFVSMGNKVTIYKSSR 113
            EV G   V L F  GQ +TL+DVLHVP ++K LVSA K   NGY + + N + +  S  
Sbjct: 355 VEVRGKGTVRLNFRDGQVVTLQDVLHVPGITKGLVSADKFDRNGYKLVIKN-LRVKFSLN 413

Query: 112 IMTLAQGSLHGGMYRLELEEE 50
            + + Q    GGMYRL+L E+
Sbjct: 414 DIYVGQAKNTGGMYRLDLAED 434


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1320

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
 Frame = -3

Query: 373 HVSGSMSDFVEYQPVTRKYVTSFDGRRSEVTGVEIVELRFFMGQKLTLKDVLHVPAVSKW 194
           HV   +S F  YQ      V   +G  + V GV  V+L+F  G+ + LK+V HVP++ + 
Sbjct: 309 HVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRN 368

Query: 193 LVSASKLVENGY-FVSMGNKVTIYKSSRIMTLAQGSLHGGMYRLELEE 53
           LVS S+L  +G+  V   NKV + K      + +G  +GG++R  L +
Sbjct: 369 LVSGSRLTRDGFKLVFESNKVVVSKHGYF--IGKGYEYGGLFRFSLSD 414


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
           gag/pol protein [Zea mays]
          Length = 1279

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = -3

Query: 373 HVSGSMSDFVEYQPVTRKYVTSFDGRRSEVTGVEIVELRFFMGQKLTLKDVLHVPAVSKW 194
           HV    S F  YQ      +   +G R+ V GV  V L+F  G+ + LK V HVP++ K 
Sbjct: 285 HVCADASMFTSYQVGRSGALLMGNGSRAHVLGVGTVILKFTSGKTVPLKSVQHVPSIKKN 344

Query: 193 LVSASKLVENGYFVSM-GNKVTIYKSSRIMTLAQGSLHGGMYRLELEE 53
           LVSAS L  +GY V +  NK  + K      + +G   GG++RL L +
Sbjct: 345 LVSASMLCRDGYKVVLESNKCVVSKHGTF--VGKGYECGGLFRLSLHD 390


>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 2027

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
 Frame = -3

Query: 373 HVSGSMSDFVEYQPVTRKYVTSFDGRRSEVTGVEIVELRFFMGQKLTLKDVLHVPAVSKW 194
           HV   +S F  YQ      V   +G  + V GV  V+L+F  G+ + LK+V HVP++ + 
Sbjct: 504 HVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRN 563

Query: 193 LVSASKLVENGY-FVSMGNKVTIYKSSRIMTLAQGSLHGGMYRLELEE 53
           LVS S+L  +G+  V   NKV + K     ++ +G   GG++R  L +
Sbjct: 564 LVSGSRLTRDGFKLVFESNKVVVSKHG--YSIGKGYECGGLFRFSLSD 609


>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
          Length = 1292

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = -3

Query: 373 HVSGSMSDFVEYQPVTRKYVTSFDGRRSEVTGVEIVELRFFMGQKLTLKDVLHVPAVSKW 194
           HV    S F  YQ      +   +G R+ V GV  V L+F  G+ + LK V HVP++ K 
Sbjct: 325 HVCADASMFTSYQVGRSGALLMGNGSRAHVLGVGTVILKFTSGKTVPLKSVQHVPSIKKN 384

Query: 193 LVSASKLVENGYFVSM-GNKVTIYKSSRIMTLAQGSLHGGMYRLELEE 53
           LVSAS L  +GY V +  NK  + K      + +G   GG++RL L +
Sbjct: 385 LVSASMLCRDGYKVVLESNKCVVSKHGTF--VGKGYDCGGLFRLSLHD 430