BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00031932
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia...   125   4e-27
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]   119   3e-25
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   118   4e-25
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...   117   1e-24
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   117   1e-24

>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268497|emb|CAB78748.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1433

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/97 (58%), Positives = 70/97 (72%)
 Frame = -1

Query: 371  LTAVFLINRTPSKVLQHLTPYEKLYNIPPDYSMLRVFGCLCFASTLLSSRHKFSPRASMC 192
            LTAVFLINR P+ VL + +PYEKL NIPP Y  L+ FGCLC++ST    RHKF PRA  C
Sbjct: 731  LTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARAC 790

Query: 191  VLIGFPSHMKAYKLLDVKTRQCFYSRDVVFHENVFPF 81
            V +G+P   K YKLLD++T     SR V+FHE++FPF
Sbjct: 791  VFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPF 827


>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
          Length = 1262

 Score =  119 bits (297), Expect = 3e-25
 Identities = 50/96 (52%), Positives = 72/96 (75%)
 Frame = -1

Query: 371 LTAVFLINRTPSKVLQHLTPYEKLYNIPPDYSMLRVFGCLCFASTLLSSRHKFSPRASMC 192
           LT   LINRTPS +L + TPY+ L+  PP+Y+  + FGCLCFAST+ ++R KF PRA+ C
Sbjct: 694 LTXTHLINRTPSSILNNQTPYQLLFQKPPNYNYFKXFGCLCFASTITNNRGKFQPRATKC 753

Query: 191 VLIGFPSHMKAYKLLDVKTRQCFYSRDVVFHENVFP 84
           + +G+P ++K YK+LD+ T + F SR+V+FHE+ FP
Sbjct: 754 IFLGYPPNIKGYKVLDLTTXKXFVSRNVJFHESTFP 789


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
           (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/110 (52%), Positives = 72/110 (65%)
 Frame = -1

Query: 371 LTAVFLINRTPSKVLQHLTPYEKLYNIPPDYSMLRVFGCLCFASTLLSSRHKFSPRASMC 192
           LTAV+LINR P+ +L+   P+E L    P Y  ++VFGCLC+AST    RHKFSPRA  C
Sbjct: 594 LTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKAC 653

Query: 191 VLIGFPSHMKAYKLLDVKTRQCFYSRDVVFHENVFPFHDGSQILYDEDPF 42
             IG+PS  K YKLLD++T     SR VVFHE +FPF  GS +  +E  F
Sbjct: 654 AFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFL-GSDLSQEEQNF 702


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
            gi|7268152|emb|CAB78488.1| retrovirus-related like
            polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score =  117 bits (293), Expect = 1e-24
 Identities = 57/115 (49%), Positives = 75/115 (65%)
 Frame = -1

Query: 368  TAVFLINRTPSKVLQHLTPYEKLYNIPPDYSMLRVFGCLCFASTLLSSRHKFSPRASMCV 189
            TAVFLINR PS +L + +PYE + N  PDYS+L+ FGCLCF ST    R KF+PRA  CV
Sbjct: 765  TAVFLINRLPSPLLNNKSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACV 824

Query: 188  LIGFPSHMKAYKLLDVKTRQCFYSRDVVFHENVFPFHDGSQILYDEDPFQGIVIP 24
             +G+PS  K YK+LD+++     SR+VVF E+VFPF     +    D F   ++P
Sbjct: 825  FLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILP 879


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  117 bits (293), Expect = 1e-24
 Identities = 54/96 (56%), Positives = 68/96 (70%)
 Frame = -1

Query: 371  LTAVFLINRTPSKVLQHLTPYEKLYNIPPDYSMLRVFGCLCFASTLLSSRHKFSPRASMC 192
            LTAVFLINRTPS++L + TPYE L    P Y  LR FGCLC++ST    RHKF PR+  C
Sbjct: 745  LTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRAC 804

Query: 191  VLIGFPSHMKAYKLLDVKTRQCFYSRDVVFHENVFP 84
            + +G+PS  K YKL+D+++   F SR+V FHE VFP
Sbjct: 805  LFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFP 840