BLASTX nr result

ID: Atractylodes22_contig00030523 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00030523
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12
emb|CBI32614.3| unnamed protein product [Vitis vinifera]               75   4e-12
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12

>ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/53 (73%), Positives = 44/53 (83%)
 Frame = -2

Query: 161 NSYDDNLLSLLRQRKTEDAWHVYTQAPHLPTPTCLSRLICQLSYQNTPSALTR 3
           +S D  LLSLLRQRKTE+AW +YTQ PHLP PTCLSRL+ QLSYQNTP +L R
Sbjct: 73  SSNDQTLLSLLRQRKTEEAWVLYTQTPHLPPPTCLSRLVSQLSYQNTPLSLRR 125


>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
           gi|449483612|ref|XP_004156638.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = -2

Query: 161 NSYDDNLLSLLRQRKTEDAWHVYTQAPHLPTPTCLSRLICQLSYQNTPSALTR 3
           +S +  LL LLRQRKT++AW  YTQ   LP+PTCLSRL+ QLSYQNTPS+LTR
Sbjct: 65  SSLEQRLLLLLRQRKTDEAWITYTQCNDLPSPTCLSRLVSQLSYQNTPSSLTR 117


>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Glycine max]
          Length = 716

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 35/50 (70%), Positives = 40/50 (80%)
 Frame = -2

Query: 152 DDNLLSLLRQRKTEDAWHVYTQAPHLPTPTCLSRLICQLSYQNTPSALTR 3
           D  LLSLLR RKTE+AW  Y+ + HLP PTCLSRL+ QLSYQNT S+LTR
Sbjct: 26  DQKLLSLLRDRKTEEAWLAYSHSTHLPNPTCLSRLVSQLSYQNTLSSLTR 75


>emb|CBI32614.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/56 (66%), Positives = 43/56 (76%)
 Frame = -2

Query: 170 PHRNSYDDNLLSLLRQRKTEDAWHVYTQAPHLPTPTCLSRLICQLSYQNTPSALTR 3
           PH +S +  LL+LLRQRKTE+AW  Y Q   LP+PTCLSRL+ QLSYQNT  ALTR
Sbjct: 84  PH-HSLNQTLLTLLRQRKTEEAWLTYVQCTQLPSPTCLSRLVSQLSYQNTHQALTR 138


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/56 (66%), Positives = 43/56 (76%)
 Frame = -2

Query: 170 PHRNSYDDNLLSLLRQRKTEDAWHVYTQAPHLPTPTCLSRLICQLSYQNTPSALTR 3
           PH +S +  LL+LLRQRKTE+AW  Y Q   LP+PTCLSRL+ QLSYQNT  ALTR
Sbjct: 76  PH-HSLNQTLLTLLRQRKTEEAWLTYVQCTQLPSPTCLSRLVSQLSYQNTHQALTR 130


Top