BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00029408
         (815 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      119   1e-24
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   117   3e-24
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   113   6e-23
gb|AEO45243.1| sigma factor [Nicotiana tabacum]                        99   1e-18
ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2...    98   2e-18

>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  119 bits (297), Expect = 1e-24
 Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 5/148 (3%)
 Frame = -3

Query: 480 MMSTMA-IGLSAGKRLLGSSYFYSDTSENLSCSSDLGFV---FAVAKNAITAQKSSKYSY 313
           MMST A IGLSAGKRLL SS++YSD +E L+C+SD           KN ITA+KSS YS 
Sbjct: 1   MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 312 SLVSNRDTHSVRYLKANAATASDPKSFTDQWVQRFDHLEEKGSEHEFSVEALLFLQ-SLL 136
           S VS+R + S + LK +    +DP S    W + ++ L+ +  + + SVE LL LQ S+L
Sbjct: 61  SCVSSRKSQSAKSLKEHVDITADP-SDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSML 119

Query: 135 EKQWKLSTDRNTTTATPTEKSSKKVHVT 52
           EKQW LS ++  T +   EK SKK+H+T
Sbjct: 120 EKQWNLSLEQTLTASPQHEKKSKKMHIT 147


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  117 bits (293), Expect = 3e-24
 Identities = 72/149 (48%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
 Frame = -3

Query: 480 MMSTMA-IGLSAGKRLLGSSYFYSDTSENLSCSSDLGFVF---AVAKNAITAQKSSKYSY 313
           MM+T A IGLS+GKRLL SS++YSD +E LS  +D G  +   A  KN I A+KSS Y  
Sbjct: 1   MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 312 SLVS-NRDTHSVRYLKANAATASDPKSFTDQWVQRFDHLEEKGSEHEFSVEALLFLQ-SL 139
           S  S NR++HS++ LK +  TAS   S    W + FD  EE+ S  ++SVEALL LQ S+
Sbjct: 61  SFPSSNRNSHSIKALKEHVDTAS-ASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSM 119

Query: 138 LEKQWKLSTDRNTTTATPTEKSSKKVHVT 52
           LEKQW LS +R  ++ + ++K++KK+ VT
Sbjct: 120 LEKQWNLSFERTNSSDSTSKKNNKKIPVT 148


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  113 bits (282), Expect = 6e-23
 Identities = 67/148 (45%), Positives = 97/148 (65%), Gaps = 5/148 (3%)
 Frame = -3

Query: 480 MMSTMAIGLSAGKRLLGSSYFYSDTSENLSCSSDLG---FVFAVAKNAITAQKSSKYSYS 310
           M +   IGLSAGKRLL S+++YSD +E LS +++ G   +     K  I A+KSS Y  S
Sbjct: 1   MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 309 LVS-NRDTHSVRYLKANAATASDPKSFTDQWVQRFDHLEEKGSEHEFSVEALLFLQ-SLL 136
             S NR+T S++ LK +  TAS P +   Q+ + F+ +EE+ S+ ++SVEALL LQ S+L
Sbjct: 61  FPSSNRNTQSIKALKEHVDTASAPSTAATQF-KTFNDMEEESSDLDYSVEALLLLQKSML 119

Query: 135 EKQWKLSTDRNTTTATPTEKSSKKVHVT 52
           EKQW LS +R  ++ +P+ KS KK+ VT
Sbjct: 120 EKQWNLSFERTDSSDSPSRKSQKKIPVT 147


>gb|AEO45243.1| sigma factor [Nicotiana tabacum]
          Length = 264

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 62/133 (46%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
 Frame = -3

Query: 462 IGLSAGKRLLGSSYFYSDTSENLSCSSDLGFV---FAVAKNAITAQKSSKYSYSLVSNRD 292
           IGLSAG R+L SS++YSD +E   C SD       F   KN I A+ SS YS S VSNR 
Sbjct: 5   IGLSAGNRILSSSFYYSDLTEKF-CVSDHALPCHHFPSPKNVINAKNSSNYSPSYVSNRK 63

Query: 291 THSVRYLKANAATASDPKSFTDQWVQRFDHLEEKGSEHEFSVEALLFLQ-SLLEKQWKLS 115
             SV+ LK +   AS+  S T+ WVQ F  L+      E SVE LL LQ S+LEKQW LS
Sbjct: 64  KQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWNLS 123

Query: 114 TDRNTTTATPTEK 76
            ++  T     +K
Sbjct: 124 AEKAMTNENNCKK 136


>ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1|
           predicted protein [Populus trichocarpa]
          Length = 499

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 6/149 (4%)
 Frame = -3

Query: 480 MMSTMA-IGLSAGKRLLGSSYFYSDTSENLSCSSDLG---FVFAVAKNAITAQKSSKYSY 313
           MM+T + IGL+ GKRLL SS+++SD +E LS  +D G   +     K+ I A+KSSKY  
Sbjct: 1   MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60

Query: 312 SLVSN-RDTHSVRYLKANAATASDPKSFTDQWVQRFDHLEEKGSEHEFSVEALLFLQ-SL 139
           S  S+ R+ HS + LK    TAS   S    W +  D  EE+ S  ++SVEAL+ LQ S+
Sbjct: 61  SFPSSYRNPHSNKALKELIDTAS-ASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSM 119

Query: 138 LEKQWKLSTDRNTTTATPTEKSSKKVHVT 52
           LEKQW LS +   ++ +  +KS+KK+ VT
Sbjct: 120 LEKQWNLSFESINSSDSKIKKSNKKIPVT 148