BLASTX nr result

ID: Atractylodes22_contig00028993 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00028993
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69725.1| hypothetical protein VITISV_009152 [Vitis vinifera]    76   2e-12
ref|XP_002283177.1| PREDICTED: translation initiation factor eIF...    73   2e-11
ref|XP_003554977.1| PREDICTED: translation initiation factor eIF...    60   1e-07
ref|XP_003543906.1| PREDICTED: translation initiation factor eIF...    57   1e-06
ref|XP_002275165.2| PREDICTED: translation initiation factor eIF...    56   3e-06

>emb|CAN69725.1| hypothetical protein VITISV_009152 [Vitis vinifera]
          Length = 841

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 58/131 (44%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
 Frame = +3

Query: 18  PFSFIPTLNPRETHLLPPPFRQSMDPRRAPRTVIDPKVRQVGFFAP---PDRSQSVXXXX 188
           P S + TL    TH+   P    MDPRR  R VIDPKVRQVGFFAP   P R+QS     
Sbjct: 49  PISTLKTL----THIHETPLH--MDPRRGARVVIDPKVRQVGFFAPGASPGRTQS----- 97

Query: 189 XXXXXXXXXXXXXXXXXXXXXXVMIPPPRHLSD-LSRAIPTGFPPNRLLSPLHRFSGESV 365
                                 VMIPPPRH SD L  A P  +PP R             
Sbjct: 98  GPPESSSPPVADNSPTGNSLSPVMIPPPRHASDNLLSARPALYPPLR--------RPGDT 149

Query: 366 IPVGSYNPSEF 398
           IPVGSYNPSEF
Sbjct: 150 IPVGSYNPSEF 160


>ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like
           [Vitis vinifera]
          Length = 650

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 51/108 (47%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
 Frame = +3

Query: 87  MDPRRAPRTVIDPKVRQVGFFAP---PDRSQSVXXXXXXXXXXXXXXXXXXXXXXXXXXV 257
           MDPRR  R VIDPKVRQVGFFAP   P R+QS                           V
Sbjct: 1   MDPRRGARVVIDPKVRQVGFFAPGASPGRTQS-----GPPESSSPPVADNSPTGNSLSPV 55

Query: 258 MIPPPRHLSD-LSRAIPTGFPPNRLLSPLHRFSGESVIPVGSYNPSEF 398
           MIPPPRH SD L  A P  +PP R             IPVGSYNPSEF
Sbjct: 56  MIPPPRHASDNLLSARPALYPPLR--------RPGDTIPVGSYNPSEF 95


>ref|XP_003554977.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like
           [Glycine max]
          Length = 660

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 52/136 (38%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
 Frame = +3

Query: 87  MDP-RRAPRTVIDP--KVRQVGFFAPPDRSQSVXXXXXXXXXXXXXXXXXXXXXXXXXXV 257
           MDP RRAPR VIDP  K+RQVGFFAPP+RSQS                           V
Sbjct: 1   MDPSRRAPRAVIDPIPKIRQVGFFAPPERSQS---------GPPDPTHSSPPISSSLSPV 51

Query: 258 MIPPPRHLSD-------------LSRAIPTGFPPNRLLSPLHRFSG--ESVIPVGSYNPS 392
           MIPPPRHLSD             LS A   G   N        F       IP  SY+  
Sbjct: 52  MIPPPRHLSDNLLLHAPRPASSPLSAAAAAGGSGNSFDYGAVFFPAPLSPAIPSSSYSSR 111

Query: 393 EFASPSVGDFFEEKNA 440
             A+   G FF+   A
Sbjct: 112 IIATTGEGGFFKGNGA 127


>ref|XP_003543906.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like
           [Glycine max]
          Length = 659

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 49/116 (42%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 87  MDP-RRAPRTVIDP--KVRQVGFFAPPDRSQSVXXXXXXXXXXXXXXXXXXXXXXXXXXV 257
           MDP RRAPR VIDP  K+RQVGFFAPP+ SQS                           V
Sbjct: 1   MDPSRRAPRAVIDPVPKIRQVGFFAPPESSQS---------GPLDPTHSSPPISNSLSPV 51

Query: 258 MIPPPRHLSDLSRAIPTGFPPNRLLSPLHRFSGESVIPVGSYNPSEFASPSVGDFF 425
           MIPPPRHLSD          P    SPL   S  +V   GS N  + A     DFF
Sbjct: 52  MIPPPRHLSDNLLL----HDPRPAASPLS--SASAVAAAGSGNSFDSA-----DFF 96


>ref|XP_002275165.2| PREDICTED: translation initiation factor eIF-2B subunit delta-like
           [Vitis vinifera] gi|297734159|emb|CBI15406.3| unnamed
           protein product [Vitis vinifera]
          Length = 649

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 48/122 (39%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
 Frame = +3

Query: 87  MDPRRAPRTVIDPKVRQVGFFAP---PDRSQSVXXXXXXXXXXXXXXXXXXXXXXXXXXV 257
           M+ RR  R  IDPKVRQVGFFAP    DRSQS                           V
Sbjct: 1   MEARRTSRIPIDPKVRQVGFFAPGALRDRSQS----GPLGFSSSPPVSNISPTGNSLSPV 56

Query: 258 MIPPPRHLSD---LSRAIPTGFPPNRLLSPLHRFSGESVIPVGSYNPSEF-----ASPSV 413
           MIPPPRH SD   LSR +      + L  P    + E  + VGSY+ SE      AS  +
Sbjct: 57  MIPPPRHASDNFVLSRPLAVPVSDSTLRPP----AVEDRMAVGSYDASELLLGTSASSRI 112

Query: 414 GD 419
           GD
Sbjct: 113 GD 114


Top