BLASTX nr result
ID: Atractylodes22_contig00026627
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00026627
(744 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 310 2e-82
dbj|BAA22288.1| polyprotein [Oryza australiensis] 301 1e-79
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 297 2e-78
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 291 9e-77
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 286 2e-75
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 310 bits (795), Expect = 2e-82
Identities = 151/227 (66%), Positives = 174/227 (76%), Gaps = 1/227 (0%)
Frame = -1
Query: 681 YDVYEFCLTGKMTNAPFKGQPERATDLLGVIHIDVCS-LSTVTRNGHHYFITFTDDFSRY 505
Y+ E CL GKMT APF G ERA+DLLG+IH DVC +ST R + YFITFTDDFSRY
Sbjct: 113 YETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRY 172
Query: 504 GYVYLLRHKSKAFEVFKEFQNEVENQLGKKIKALRSDRGGEYLSQEFDDHLRSCGIISQL 325
GYVYL++HKSK+FE FKEFQNEV+NQ GK IKALRSDRGGEYLSQ F DHLR CGI+SQL
Sbjct: 173 GYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQL 232
Query: 324 TPPRTS*HNGVS*RRNRILLDMIRSMMNRDYLPKSFWGYVLETVARILNCVSIKKVGKFP 145
TPP T NGVS RRNR LLDM+RSMM+ LP FWGY LET A +LN K V K P
Sbjct: 233 TPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTP 292
Query: 144 YKVWTGKIPNLSYMKIWCCDAYVKREASGKLEPRSKNVIFVGHPKET 4
Y++WTGK+PNLS++KIW C++Y KR + KL P+S FVG+PKET
Sbjct: 293 YEIWTGKVPNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKET 339
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 301 bits (770), Expect(2) = 1e-79
Identities = 145/227 (63%), Positives = 174/227 (76%), Gaps = 1/227 (0%)
Frame = -1
Query: 681 YDVYEFCLTGKMTNAPFKGQPERATDLLGVIHIDVCS-LSTVTRNGHHYFITFTDDFSRY 505
++ E CL GKMT APF G ERA+DLL ++H DVC +S+ R G+ YFITFTDDFSRY
Sbjct: 469 FETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRY 528
Query: 504 GYVYLLRHKSKAFEVFKEFQNEVENQLGKKIKALRSDRGGEYLSQEFDDHLRSCGIISQL 325
GY+YL+RHKS++FE FKEFQNEV+N LGK IK LRSDRGGEY+SQEF +HL+ CGI+ QL
Sbjct: 529 GYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQL 588
Query: 324 TPPRTS*HNGVS*RRNRILLDMIRSMMNRDYLPKSFWGYVLETVARILNCVSIKKVGKFP 145
TPP T NGVS RRNR LLDM+RSMM++ LP SFWGY LET A LN V K V K P
Sbjct: 589 TPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTP 648
Query: 144 YKVWTGKIPNLSYMKIWCCDAYVKREASGKLEPRSKNVIFVGHPKET 4
Y++WTG+ P+LS++KIW C+AYVKR S KL P+S VG+PKET
Sbjct: 649 YEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKET 695
Score = 22.3 bits (46), Expect(2) = 1e-79
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 724 TYVWHCCLG 698
T++WHC LG
Sbjct: 437 TFIWHCRLG 445
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 297 bits (760), Expect(2) = 2e-78
Identities = 145/227 (63%), Positives = 173/227 (76%), Gaps = 1/227 (0%)
Frame = -1
Query: 681 YDVYEFCLTGKMTNAPFKGQPERATDLLGVIHIDVCS-LSTVTRNGHHYFITFTDDFSRY 505
++ YEFCL GKMT APF GQ ER+++LLG++HIDVC +S+ R G YFITFTDDFSRY
Sbjct: 263 FETYEFCLLGKMTKAPFTGQSERSSELLGLVHIDVCEPMSSTARGGFGYFITFTDDFSRY 322
Query: 504 GYVYLLRHKSKAFEVFKEFQNEVENQLGKKIKALRSDRGGEYLSQEFDDHLRSCGIISQL 325
YVYL+RHKS++FE FKEFQNEV+N LGK IK LRSDRGGEYLS EF +HL+ CGI+ QL
Sbjct: 323 VYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQL 382
Query: 324 TPPRTS*HNGVS*RRNRILLDMIRSMMNRDYLPKSFWGYVLETVARILNCVSIKKVGKFP 145
TPP T N VS RRNR LLDM++SMM++ LP FWGY LET A LN V K V K
Sbjct: 383 TPPGTPQWNRVSERRNRTLLDMVQSMMSQTDLPLCFWGYALETAAFTLNRVPSKSVDKTS 442
Query: 144 YKVWTGKIPNLSYMKIWCCDAYVKREASGKLEPRSKNVIFVGHPKET 4
Y++WTGK P+LS++KIW C+ YVKR S KL P+S FVG+PKET
Sbjct: 443 YEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKET 489
Score = 22.3 bits (46), Expect(2) = 2e-78
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 724 TYVWHCCLG 698
T++WHC LG
Sbjct: 231 TFIWHCRLG 239
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 291 bits (745), Expect(2) = 9e-77
Identities = 143/227 (62%), Positives = 169/227 (74%), Gaps = 1/227 (0%)
Frame = -1
Query: 681 YDVYEFCLTGKMTNAPFKGQPERATDLLGVIHIDVCS-LSTVTRNGHHYFITFTDDFSRY 505
++ E CL GKMT APF GQ ERA++LL ++H DVC +S+ R G YF TFTDDFSRY
Sbjct: 445 FETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDDFSRY 504
Query: 504 GYVYLLRHKSKAFEVFKEFQNEVENQLGKKIKALRSDRGGEYLSQEFDDHLRSCGIISQL 325
GYVYL+RHKS++FE FKEF NEV+N LGK IK LRSDRGGEYLS EF +HL+ CGI+ QL
Sbjct: 505 GYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQL 564
Query: 324 TPPRTS*HNGVS*RRNRILLDMIRSMMNRDYLPKSFWGYVLETVARILNCVSIKKVGKFP 145
TPP T NGVS RNR LLDM+RSMM++ L SFWGY LET A LN V K V K P
Sbjct: 565 TPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSVDKTP 624
Query: 144 YKVWTGKIPNLSYMKIWCCDAYVKREASGKLEPRSKNVIFVGHPKET 4
Y++WTGK P+LS++KIW C+ YVKR S KL P+S FVG+PKET
Sbjct: 625 YEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKET 671
Score = 22.3 bits (46), Expect(2) = 9e-77
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 724 TYVWHCCLG 698
T++WHC LG
Sbjct: 413 TFIWHCRLG 421
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 286 bits (733), Expect(2) = 2e-75
Identities = 142/227 (62%), Positives = 169/227 (74%), Gaps = 1/227 (0%)
Frame = -1
Query: 681 YDVYEFCLTGKMTNAPFKGQPERATDLLGVIHIDVCS-LSTVTRNGHHYFITFTDDFSRY 505
++ E CL GKMT APF GQ ER ++LL ++H DVC +S+ R G YFITFTDDFSRY
Sbjct: 945 FETCESCLLGKMTKAPFTGQSERTSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRY 1004
Query: 504 GYVYLLRHKSKAFEVFKEFQNEVENQLGKKIKALRSDRGGEYLSQEFDDHLRSCGIISQL 325
GYVYL+RHKS++FE FKEFQNEV+N L K IK LRSD GGEYLS EF +HL+ CGI+ QL
Sbjct: 1005 GYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQL 1064
Query: 324 TPPRTS*HNGVS*RRNRILLDMIRSMMNRDYLPKSFWGYVLETVARILNCVSIKKVGKFP 145
TPP T NGVS RRNR LL+M+RSMM++ L SFWGY LET A LN V K V K P
Sbjct: 1065 TPPGTPQWNGVSERRNRTLLNMVRSMMSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTP 1124
Query: 144 YKVWTGKIPNLSYMKIWCCDAYVKREASGKLEPRSKNVIFVGHPKET 4
Y++WTGK P+LS++KIW C+ YVKR S KL P+S FVG+PKET
Sbjct: 1125 YEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSNKCFFVGYPKET 1171
Score = 22.3 bits (46), Expect(2) = 2e-75
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 724 TYVWHCCLG 698
T++WHC LG
Sbjct: 913 TFIWHCRLG 921