BLASTX nr result

ID: Atractylodes22_contig00026396 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00026396
         (206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    64   1e-08
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    64   1e-08
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    62   5e-08
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    59   4e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    58   7e-07

>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = -2

Query: 205 TPGQDHVEWVAFHNRLLTHDRMLAWKEHPPDPRCLFCKLELDSRSHLFFSCLFPSNVW 32
           TP    V W+AFHNRL T DR+  W        C+FC  EL++R HLFFSC + S +W
Sbjct: 121 TPKYSFVTWLAFHNRLATGDRLYKWNSEAR-ATCVFCDEELETRDHLFFSCPYSSQIW 177


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = -2

Query: 205 TPGQDHVEWVAFHNRLLTHDRMLAWKEHPPDPRCLFCKLELDSRSHLFFSCLFPSNVW 32
           TP    V W+AFHNRL T DR+  W        C+FC  EL++R HLFFSC + S +W
Sbjct: 289 TPKYSFVTWLAFHNRLATGDRLYKWNSEAR-ATCVFCDEELETRDHLFFSCPYSSQIW 345


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/58 (48%), Positives = 36/58 (62%)
 Frame = -2

Query: 205  TPGQDHVEWVAFHNRLLTHDRMLAWKEHPPDPRCLFCKLELDSRSHLFFSCLFPSNVW 32
            TP    V W+AFHNRL T D++  W        C+FC  EL++R HLFFSC + S+VW
Sbjct: 1213 TPKYSFVTWLAFHNRLTTSDKICKWNSGARYD-CVFCGEELETRDHLFFSCPYSSHVW 1269


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/61 (40%), Positives = 36/61 (59%)
 Frame = -2

Query: 205  TPGQDHVEWVAFHNRLLTHDRMLAWKEHPPDPRCLFCKLELDSRSHLFFSCLFPSNVWKR 26
            TP    + W+A H+RL T D+M +W        C+ C +  +SR HLFFSC F S++W R
Sbjct: 1249 TPKFTFISWLAAHDRLTTGDKMASWNRGISSV-CVLCNISAESRDHLFFSCNFSSHIWDR 1307

Query: 25   M 23
            +
Sbjct: 1308 L 1308


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 24/58 (41%), Positives = 32/58 (55%)
 Frame = -2

Query: 205 TPGQDHVEWVAFHNRLLTHDRMLAWKEHPPDPRCLFCKLELDSRSHLFFSCLFPSNVW 32
           TP      W+A  NRL T DRM+ W    P   C+FC   +++R HLFF C + S +W
Sbjct: 788 TPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTT-CVFCSSPMETRDHLFFQCCYSSEIW 844


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