BLASTX nr result

ID: Atractylodes22_contig00025865 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00025865
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317075.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
gb|ABA40425.1| unknown [Solanum tuberosum] gi|413968558|gb|AFW90...    64   2e-08
ref|XP_002299012.1| predicted protein [Populus trichocarpa] gi|1...    64   2e-08
ref|XP_002276595.1| PREDICTED: mRNA turnover protein 4 homolog [...    64   2e-08
ref|XP_002528622.1| mRNA turnover protein 4 mrt4, putative [Rici...    63   3e-08

>ref|XP_002317075.1| predicted protein [Populus trichocarpa] gi|222860140|gb|EEE97687.1|
           predicted protein [Populus trichocarpa]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = -3

Query: 392 MGIKMATFKLHLLCRWSPEDFEAYQEGLEGSDIESS 285
           +G KMATF+LHL+CRWSPEDFE Y+EGL+ SD+ES+
Sbjct: 194 LGTKMATFRLHLICRWSPEDFELYREGLDESDVESA 229


>gb|ABA40425.1| unknown [Solanum tuberosum] gi|413968558|gb|AFW90616.1| putative
           ribosomal protein L1 [Solanum tuberosum]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 27/36 (75%), Positives = 33/36 (91%)
 Frame = -3

Query: 392 MGIKMATFKLHLLCRWSPEDFEAYQEGLEGSDIESS 285
           +G KMATF+LHL+CRWSP++FE Y+EGLE SDIESS
Sbjct: 194 LGKKMATFRLHLICRWSPDEFEIYREGLEESDIESS 229


>ref|XP_002299012.1| predicted protein [Populus trichocarpa] gi|118486150|gb|ABK94918.1|
           unknown [Populus trichocarpa]
           gi|222846270|gb|EEE83817.1| predicted protein [Populus
           trichocarpa]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = -3

Query: 392 MGIKMATFKLHLLCRWSPEDFEAYQEGLEGSDIESS 285
           +G K ATFKLHL+CRWSPEDFE Y+EGL+ SD+ES+
Sbjct: 194 LGTKTATFKLHLICRWSPEDFELYREGLDDSDVESA 229


>ref|XP_002276595.1| PREDICTED: mRNA turnover protein 4 homolog [Vitis vinifera]
           gi|298204604|emb|CBI23879.3| unnamed protein product
           [Vitis vinifera]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 25/36 (69%), Positives = 34/36 (94%)
 Frame = -3

Query: 392 MGIKMATFKLHLLCRWSPEDFEAYQEGLEGSDIESS 285
           +GIKMATF+LHL+CRWSP++F+ Y+EGL+ SD+ESS
Sbjct: 194 LGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229


>ref|XP_002528622.1| mRNA turnover protein 4 mrt4, putative [Ricinus communis]
           gi|223531967|gb|EEF33780.1| mRNA turnover protein 4
           mrt4, putative [Ricinus communis]
          Length = 182

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 25/36 (69%), Positives = 33/36 (91%)
 Frame = -3

Query: 392 MGIKMATFKLHLLCRWSPEDFEAYQEGLEGSDIESS 285
           +GIKMATF+LHL+CRWSPEDFE Y+EG + SD++S+
Sbjct: 147 LGIKMATFRLHLICRWSPEDFELYREGQDESDVDSA 182


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