BLASTX nr result

ID: Atractylodes22_contig00024603 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00024603
         (619 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   105   5e-21
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   103   3e-20
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           101   9e-20
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   101   9e-20
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    98   1e-18

>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
           putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  105 bits (263), Expect = 5e-21
 Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 8/213 (3%)
 Frame = +2

Query: 5   DTQLMDLKWSGYEFTWNGLGQV----KKLDRIMINPGFVECFPAAYAEFLHPDLSDH-SP 169
           D +L DL + G  FTW    +     KK+DRI++N  +   FP+++  F  PD SDH S 
Sbjct: 167 DAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASC 226

Query: 170 GVAFIPARFKKRPPAFKFENFLTRHRGFLGCVEEVW-KRRVDGYAMFRVSTKMKLLKRPL 346
           GV       K + P FKF NFL ++  FL  V +VW    V G +MFRVS K+K LK+P+
Sbjct: 227 GVVLELDPIKAKRP-FKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPI 285

Query: 347 RQL-RTGISGPMVRVSKCKQMLHEAQALVDKHPE-DDMCRERQSMALMELRNALVDKEIH 520
           +   R   S    R  +  + L   Q L   +P  ++   E ++    ++      +E  
Sbjct: 286 KDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLENAAHELEAQRKWQI--LATAEESF 343

Query: 521 FKQRSKMHWLKLGDANTKFFHNVVKEQNSFRRV 619
           F+QRS++ W   GD NT++FH +   + S   +
Sbjct: 344 FRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTI 376


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score =  103 bits (256), Expect = 3e-20
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
 Frame = +2

Query: 5   DTQLMDLKWSGYEFTWNGLGQV----KKLDRIMINPGFVECFPAAYAEFLHPDLSDH-SP 169
           + +L DL + G  FTW          KKLDRI++N  +   FP+AYA F  PD SDH S 
Sbjct: 124 EAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASC 183

Query: 170 GVAFIPARFKKRPPAFKFENFLTRHRGFLGCVEEVW-KRRVDGYAMFRVSTKMKLLKRPL 346
           GV   P   +++ P F+F NFL ++  F+  V E+W    V G +MF++S K+K LK P+
Sbjct: 184 GVIINPLMHREKRP-FRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPI 242

Query: 347 RQLRTGISGPMVRVSKCKQMLHEAQALVDKHPEDDMCRERQSMALMELRNALVD------ 508
           R         M   S  ++ + EA  LV       + R+ ++++   + NA ++      
Sbjct: 243 RTF------SMENFSNLEKRVKEAHNLV-------LYRQNKTLSDPTIPNAALEMEAQRK 289

Query: 509 -------KEIHFKQRSKMHWLKLGDANTKFFHNVVKEQNSFRRV 619
                  +E  F QRS++ W+  GD+NT +FH +   + +   +
Sbjct: 290 WLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTI 333


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  101 bits (252), Expect = 9e-20
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 8/213 (3%)
 Frame = +2

Query: 5   DTQLMDLKWSGYEFTWNGLGQV----KKLDRIMINPGFVECFPAAYAEFLHPDLSDH-SP 169
           + +L DL + G  FTW     +    KKLDRI+ N  +   +P+++  F + D SDH S 
Sbjct: 35  EMELSDLVFKGNSFTWWNKSSIRPIAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSC 94

Query: 170 GVAFIPARFKKRPPAFKFENFLTRHRGFLGCVEEVW-KRRVDGYAMFRVSTKMKLLKRPL 346
           GV         + P FKF NFL ++  FL  V + W    V G +M+RVS K+K +K+P+
Sbjct: 95  GVVLEANGISAKRP-FKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPI 153

Query: 347 RQL-RTGISGPMVRVSKCKQMLHEAQALVDKHPE-DDMCRERQSMALMELRNALVDKEIH 520
           +   R   SG  +R  +  ++L   Q L   +P   +   E ++     L +    +E  
Sbjct: 154 KDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCA--EESF 211

Query: 521 FKQRSKMHWLKLGDANTKFFHNVVKEQNSFRRV 619
           F QRS++ W   GD+NT +FH +V  + SF  +
Sbjct: 212 FHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTI 244


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  101 bits (252), Expect = 9e-20
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 8/213 (3%)
 Frame = +2

Query: 5   DTQLMDLKWSGYEFTWNGLGQV----KKLDRIMINPGFVECFPAAYAEFLHPDLSDH-SP 169
           + +L DL + G  FTW     +    KKLDRI+ N  +   +P+++  F + D SDH S 
Sbjct: 35  EMELSDLVFKGNSFTWWNKSSIRPIAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSC 94

Query: 170 GVAFIPARFKKRPPAFKFENFLTRHRGFLGCVEEVW-KRRVDGYAMFRVSTKMKLLKRPL 346
           GV         + P FKF NFL ++  FL  V + W    V G +M+RVS K+K +K+P+
Sbjct: 95  GVVLEANGISAKRP-FKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPI 153

Query: 347 RQL-RTGISGPMVRVSKCKQMLHEAQALVDKHPE-DDMCRERQSMALMELRNALVDKEIH 520
           +   R   SG  +R  +  ++L   Q L   +P   +   E ++     L +    +E  
Sbjct: 154 KDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCA--EESF 211

Query: 521 FKQRSKMHWLKLGDANTKFFHNVVKEQNSFRRV 619
           F QRS++ W   GD+NT +FH +V  + SF  +
Sbjct: 212 FHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTI 244


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
 Frame = +2

Query: 5    DTQLMDLKWSGYEFTWNGLGQ----VKKLDRIMINPGFVECFPAAYAEFLHPDLSDHSPG 172
            + ++ DL++SG  +TW+        ++KLDR+++N  +   FP + A FL   +SDHSP 
Sbjct: 548  EAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLKFPLSEARFLPSGMSDHSPM 607

Query: 173  VAFIPARFKKRPPAFKFENFLTRHRGFLGCVEEVWKRRVDGYAMFRVSTKMKLLKRPLRQ 352
            V  +    + +   F+F +    H  F+  V++VW +   G  M+++  K++ LK+ L+ 
Sbjct: 608  VVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQELKL 667

Query: 353  LRTG-ISGPMVRVSKCKQMLHEAQALVDKHPEDDMCRERQSMALMELRNALVDKEIHFKQ 529
                  S    RV   K  + +AQ  +    E+ +   R+   + +  + +  +E  FKQ
Sbjct: 668  FNMAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEESFFKQ 727

Query: 530  RSKMHWLKLGDANTKFFHNVV 592
            ++++ WL LGD NT +FH  V
Sbjct: 728  KARIQWLSLGDQNTSYFHKSV 748


Top