BLASTX nr result

ID: Atractylodes22_contig00024160 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00024160
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524496.1| PREDICTED: transcription factor BIM1-like [G...    57   3e-06
ref|XP_003549583.1| PREDICTED: transcription factor BIM1-like [G...    57   4e-06
ref|NP_198702.2| transcription factor BIM3 [Arabidopsis thaliana...    50   5e-06

>ref|XP_003524496.1| PREDICTED: transcription factor BIM1-like [Glycine max]
          Length = 548

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -1

Query: 194 RFSMLREQ-QIKREIRHHCY*RTEVIDYIHFLQEKVHKYEDS---WNNEPPMMIPWVNYD 27
           RF MLRE      + R       EVI+YIHFLQEKVHKYE S   W+NEP  ++PW N D
Sbjct: 282 RFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPERLMPWRNND 341


>ref|XP_003549583.1| PREDICTED: transcription factor BIM1-like [Glycine max]
          Length = 566

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -1

Query: 194 RFSMLREQ-QIKREIRHHCY*RTEVIDYIHFLQEKVHKYEDS---WNNEPPMMIPWVNYD 27
           RF MLRE      + R       EV++YIHFLQEKVHKYE S   W+NEP  ++PW N D
Sbjct: 283 RFQMLRELIPHSDQKRDKASFLLEVVEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWRNND 342


>ref|NP_198702.2| transcription factor BIM3 [Arabidopsis thaliana]
           gi|61211679|sp|Q9FMB6.1|BIM3_ARATH RecName:
           Full=Transcription factor BIM3; AltName:
           Full=BES1-interacting Myc-like protein 3; AltName:
           Full=Basic helix-loop-helix protein 141;
           Short=AtbHLH141; Short=bHLH 141; AltName:
           Full=Transcription factor EN 127; AltName: Full=bHLH
           transcription factor bHLH141 gi|9758063|dbj|BAB08642.1|
           DNA-binding protein-like [Arabidopsis thaliana]
           gi|45935053|gb|AAS79561.1| basic helix-loop-helix family
           protein [Arabidopsis thaliana]
           gi|46367492|emb|CAG25872.1| hypothetical protein
           [Arabidopsis thaliana] gi|193885157|gb|ACF28392.1|
           At5g38860 [Arabidopsis thaliana]
           gi|332006984|gb|AED94367.1| transcription factor BIM3
           [Arabidopsis thaliana]
          Length = 298

 Score = 50.4 bits (119), Expect(2) = 5e-06
 Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = -1

Query: 128 EVIDYIHFLQEKVHKYEDS---WNNEPPMMIPWVN 33
           EVI+YIHFLQEKVH YEDS   W   P  +IPW N
Sbjct: 77  EVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRN 111



 Score = 25.4 bits (54), Expect(2) = 5e-06
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 180 ERTTDQKRDKASLLLE 133
           +   DQKRDKAS LLE
Sbjct: 62  QNQNDQKRDKASFLLE 77


Top