BLASTX nr result

ID: Atractylodes22_contig00024137 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00024137
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               100   6e-22
gb|ABA26965.1| TO22-2 [Taraxacum officinale]                          101   6e-20
emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera]    71   8e-11
gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]      70   1e-10
emb|CCI55364.1| PH01B035L11.9 [Phyllostachys edulis]                   70   2e-10

>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  100 bits (248), Expect(2) = 6e-22
 Identities = 47/71 (66%), Positives = 57/71 (80%)
 Frame = -1

Query: 280 WILDSGASHHMSPYLSSFVYLSPGSPVSIMTANGTSMPLEGVGSIVTSHVSLPDVYYIPN 101
           W+LDSGASHHMSP  SSF  +SP S + +MTA+GT MPL GVGS+VT H+SLP+VY IP 
Sbjct: 342 WVLDSGASHHMSPDSSSFTSVSPLSSIPVMTADGTPMPLAGVGSVVTLHLSLPNVYLIPK 401

Query: 100 LALNLASVSQL 68
           L LNLAS+ Q+
Sbjct: 402 LKLNLASIGQI 412



 Score = 28.9 bits (63), Expect(2) = 6e-22
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 69  CESGLW-VFFSDFLCCVQDPRSQK 1
           C+SG + V FS   CCVQD +SQK
Sbjct: 413 CDSGDYLVMFSGSFCCVQDLQSQK 436


>gb|ABA26965.1| TO22-2 [Taraxacum officinale]
          Length = 99

 Score =  101 bits (252), Expect = 6e-20
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = -1

Query: 280 WILDSGASHHMSPYLSSFVYLSPGSPVSIMTANGTSMPLEGVGSIVTSHVSLPDVYYIPN 101
           WILDSGASHHMSP++SSF  LSP +PVS+++A+ T M +EGVGSIVT ++SL DVYYIP 
Sbjct: 33  WILDSGASHHMSPHMSSFSSLSPRAPVSVLSASATPMSVEGVGSIVTPYISLTDVYYIPT 92

Query: 100 LALNLAS 80
           LALNLAS
Sbjct: 93  LALNLAS 99


>emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera]
          Length = 993

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
 Frame = -1

Query: 280 WILDSGASHHMSPYLSSFVYL--SPGSPVSIMTANGTSMPLEGVGSIVTSHVSLPDVYYI 107
           W+LDS  SHHMS   SSFV +  SP S  S++T + T MPL GVGSI T ++SL +VY I
Sbjct: 254 WVLDSXTSHHMSLSSSSFVSMCHSPSSX-SVITXDSTPMPLAGVGSICTXYLSLFNVYCI 312

Query: 106 PNLALNLASVSQL 68
           P L +NL  VSQL
Sbjct: 313 PKLTMNLIFVSQL 325


>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1419

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/71 (46%), Positives = 47/71 (66%)
 Frame = -1

Query: 280 WILDSGASHHMSPYLSSFVYLSPGSPVSIMTANGTSMPLEGVGSIVTSHVSLPDVYYIPN 101
           WILDSGAS HM+P +S     S     S+ TA+GT +P+   G++ T   ++PDV+Y+PN
Sbjct: 488 WILDSGASFHMTPDISQLQSCSLTKASSVQTADGTILPVSLQGTLQTKEYTIPDVFYVPN 547

Query: 100 LALNLASVSQL 68
           L++ L SV QL
Sbjct: 548 LSMKLISVGQL 558


>emb|CCI55364.1| PH01B035L11.9 [Phyllostachys edulis]
          Length = 697

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = -1

Query: 280 WILDSGASHHMSPYLSSFVYLSP-GSPVSIMTANGTSMPLEGVGSIVTSHVSLPDVYYIP 104
           WILDSGAS HM+ Y S+  +++P  SPVS++TA+GTS+ + G G +  S   +P V Y+P
Sbjct: 292 WILDSGASFHMTSYSSTLSFITPLDSPVSVLTADGTSLSVSGRGPLSNSSFHVPSVAYVP 351

Query: 103 NLALNLASVSQL 68
            L + L S  Q+
Sbjct: 352 RLTMQLLSAGQI 363


Top