BLASTX nr result

ID: Atractylodes22_contig00024023 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00024023
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG52334.1|AC011663_13 putative ABC transporter; 82503-78258 ...    59   3e-07
ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis...    59   3e-07
ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata] gi...    59   4e-07
ref|XP_003613125.1| ABC transporter B family member [Medicago tr...    57   1e-06
gb|EEC72012.1| hypothetical protein OsI_04878 [Oryza sativa Indi...    57   1e-06

>gb|AAG52334.1|AC011663_13 putative ABC transporter; 82503-78258 [Arabidopsis thaliana]
          Length = 659

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
 Frame = -1

Query: 312 RGSTTKFKIASSCCYNFDSTSLGELLVPKDRVDGMKQNSST--NIEKWVDFI----PGRS 151
           + ST  +++ S  C    ST  G +    +  +G   N S    I + +DF+    PG S
Sbjct: 47  QSSTRNYRLPSINC----STVNGAVAETAEYYEGEGDNVSLAEKIRQCIDFLRTILPGGS 102

Query: 150 WWNLEDEDEAGKVKATNPVTVWYVLCRMWGLVADDKMVICIGFGSLTFAA 1
           WW+  DE +   +    PVTVW  L RMW LVA+D+ VI   F +L  AA
Sbjct: 103 WWSFSDEVDGRFI--AKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAA 150


>ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis thaliana]
           gi|75330788|sp|Q8RY46.1|AB26B_ARATH RecName: Full=ABC
           transporter B family member 26, chloroplastic; Short=ABC
           transporter ABCB.26; Short=AtABCB26; AltName:
           Full=Antigen peptide transporter-like 1; AltName:
           Full=Transporter associated with antigen processing-like
           protein 1; Short=AtTAP1; Flags: Precursor
           gi|19335722|gb|AAL85485.1| transporter associated with
           antigen processing-like protein [Arabidopsis thaliana]
           gi|110737412|dbj|BAF00650.1| transporter associated with
           antigen processing-like protein [Arabidopsis thaliana]
           gi|332196967|gb|AEE35088.1| ABC transporter B family
           member 26 [Arabidopsis thaliana]
          Length = 700

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
 Frame = -1

Query: 312 RGSTTKFKIASSCCYNFDSTSLGELLVPKDRVDGMKQNSST--NIEKWVDFI----PGRS 151
           + ST  +++ S  C    ST  G +    +  +G   N S    I + +DF+    PG S
Sbjct: 47  QSSTRNYRLPSINC----STVNGAVAETAEYYEGEGDNVSLAEKIRQCIDFLRTILPGGS 102

Query: 150 WWNLEDEDEAGKVKATNPVTVWYVLCRMWGLVADDKMVICIGFGSLTFAA 1
           WW+  DE +   +    PVTVW  L RMW LVA+D+ VI   F +L  AA
Sbjct: 103 WWSFSDEVDGRFI--AKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAA 150


>ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata]
           gi|297333157|gb|EFH63575.1| ATTAP1 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
 Frame = -1

Query: 312 RGSTTKFKIASSCCYNFDSTSLGELLVPKDRVDGMKQNSST--NIEKWVDFI----PGRS 151
           + S+  +++ S  C    ST  G +    +  +G   N S    I + +DFI    PG S
Sbjct: 47  QSSSRNYRLPSINC----STVNGAVAETAEYYEGEGDNVSVPEKIRQCIDFIRTILPGGS 102

Query: 150 WWNLEDEDEAGKVKATNPVTVWYVLCRMWGLVADDKMVICIGFGSLTFAA 1
           WW+  DE +   +    PVTVW  L RMW LVA+D+ VI   F +L  AA
Sbjct: 103 WWSFSDEVDGRFI--AKPVTVWRALTRMWELVAEDRWVIFAAFSTLIVAA 150


>ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula]
           gi|355514460|gb|AES96083.1| ABC transporter B family
           member [Medicago truncatula]
          Length = 712

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -1

Query: 186 IEKWVDFIP----GRSWWNLEDEDEAGKVKATNPVTVWYVLCRMWGLVADDKMVICIGFG 19
           I K V F+P    G +WWN  D+ E        PVTVWY L +MW LVA D+ VI   F 
Sbjct: 88  IRKLVSFLPSIFPGGTWWNFSDDVEVSMFN--QPVTVWYALGKMWNLVAKDRWVIFAAFS 145

Query: 18  SLTFAA 1
           +L  AA
Sbjct: 146 ALIIAA 151


>gb|EEC72012.1| hypothetical protein OsI_04878 [Oryza sativa Indica Group]
          Length = 723

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = -1

Query: 186 IEKWVDFIPGRSWWNLEDEDEAGKVKA-TNPVTVWYVLCRMWGLVADDKMVICIGFGSLT 10
           IE+  + +PG SWW LED +EAG  +A  +  T    L RMW LVA D+ V+ +GF SL 
Sbjct: 76  IERLRNVLPGGSWWRLEDGEEAGGGRAEASGATAASALRRMWALVASDRWVVFVGFASLV 135

Query: 9   FAA 1
            AA
Sbjct: 136 GAA 138


Top