BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00018775
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   167   8e-40
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   165   3e-39
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...   165   4e-39
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   164   5e-39
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   160   8e-38

>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score =  167 bits (423), Expect = 8e-40
 Identities = 97/173 (56%), Positives = 112/173 (64%), Gaps = 12/173 (6%)
 Frame = -1

Query: 485 MVLIDTNPLFWSSTATPFSFSKFLSXXXXXXXXXXXXXXXXXXXXIATGFNSCDYIYDSS 306
           ++L+DTNPLFWS+T+   +FS+FLS                    IATG++SCDYIYDSS
Sbjct: 17  VLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSS 74

Query: 305 LGHTTQRAET-----------LLQKLEEFVVKDEELNKKD-SVDXXXXXXXXXXXSMALC 162
           L       E+           LL+KLEEFV KDEEL+K++ S D           SMALC
Sbjct: 75  LTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALC 134

Query: 161 YIQRVFRSGSLHPQPRILCLHGSQDGPGQYVAIMNSIFSAQRSMVPIDSCVIG 3
           YIQRVFRSG LHPQPRILCL GS DGP QYVA+MNSIFSAQR MVPIDSC IG
Sbjct: 135 YIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIG 187


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  165 bits (418), Expect = 3e-39
 Identities = 95/173 (54%), Positives = 112/173 (64%), Gaps = 12/173 (6%)
 Frame = -1

Query: 485 MVLIDTNPLFWSSTATPFSFSKFLSXXXXXXXXXXXXXXXXXXXXIATGFNSCDYIYDSS 306
           ++L+DTNPLFWS+T+   +FS+FLS                    IATG++SCDYIYDSS
Sbjct: 17  VLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSS 74

Query: 305 LGHTTQRAET-----------LLQKLEEFVVKDEELNKKD-SVDXXXXXXXXXXXSMALC 162
           L       E+           LL+KLE+FV KDEEL++++ S D           SMALC
Sbjct: 75  LTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALC 134

Query: 161 YIQRVFRSGSLHPQPRILCLHGSQDGPGQYVAIMNSIFSAQRSMVPIDSCVIG 3
           YIQRVFRSG LHPQPRILCL GS DGP QYVA+MNSIFSAQR MVPIDSC IG
Sbjct: 135 YIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIG 187


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score =  165 bits (417), Expect = 4e-39
 Identities = 92/170 (54%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
 Frame = -1

Query: 485 MVLIDTNPLFWSSTATPFSFSKFLSXXXXXXXXXXXXXXXXXXXXIATGFNSCDYIYDSS 306
           MVL+DTNP FW++++ PFS  +FLS                    IA G+NSCDYIYDSS
Sbjct: 17  MVLLDTNPFFWTTSSLPFS--QFLSHVLAFLNSILLLNQLNQVVVIANGYNSCDYIYDSS 74

Query: 305 L--------GHTTQRAETLLQKLEEFVVKDEELNK-KDSVDXXXXXXXXXXXSMALCYIQ 153
           L        G        LLQKLE+F+++DE+L K ++S             SMALCYIQ
Sbjct: 75  LVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASSLLSGSLSMALCYIQ 134

Query: 152 RVFRSGSLHPQPRILCLHGSQDGPGQYVAIMNSIFSAQRSMVPIDSCVIG 3
           R+FRSG LHPQPRILCL GS DGP QYVA+MNSIFSAQRSMVPIDSC +G
Sbjct: 135 RIFRSGPLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCYVG 184


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  164 bits (416), Expect = 5e-39
 Identities = 91/170 (53%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
 Frame = -1

Query: 485 MVLIDTNPLFWSSTATPFSFSKFLSXXXXXXXXXXXXXXXXXXXXIATGFNSCDYIYDSS 306
           +VL+DTNP FW+  ++  SFS+FLS                    IA+G+N+CDYIYDSS
Sbjct: 8   VVLLDTNPFFWTPPSS-LSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSS 66

Query: 305 L---------GHTTQRAETLLQKLEEFVVKDEELNKKDSVDXXXXXXXXXXXSMALCYIQ 153
                     G        LLQKLEEF++KDE+L K+ S             SMALCYIQ
Sbjct: 67  SDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQ 126

Query: 152 RVFRSGSLHPQPRILCLHGSQDGPGQYVAIMNSIFSAQRSMVPIDSCVIG 3
           RVFRSG LHPQPRILCL GS DGP QYVA+MN+IFSAQRSMVPIDSC +G
Sbjct: 127 RVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVG 176


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  160 bits (406), Expect = 8e-38
 Identities = 92/170 (54%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
 Frame = -1

Query: 485 MVLIDTNPLFWSSTATPFSFSKFLSXXXXXXXXXXXXXXXXXXXXIATGFNSCDYIYDSS 306
           +VL+DTNP FWS+ + PFS  KFLS                    IATG NSC++I+DSS
Sbjct: 17  VVLLDTNPFFWSTASLPFS--KFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSS 74

Query: 305 L---------GHTTQRAETLLQKLEEFVVKDEELNKKDSVDXXXXXXXXXXXSMALCYIQ 153
                     G        LLQKLEEFV  DE+L+K+               SMALCYIQ
Sbjct: 75  SVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQ 134

Query: 152 RVFRSGSLHPQPRILCLHGSQDGPGQYVAIMNSIFSAQRSMVPIDSCVIG 3
           RVFR+G LHPQPRILCL GS DGP QYVA+MN+IFSAQRSMVPIDSCVIG
Sbjct: 135 RVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIG 184