BLASTX nr result
ID: Atractylodes22_contig00017050
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00017050
(354 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 62 4e-08
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 62 4e-08
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 62 4e-08
gb|EHK19641.1| hypothetical protein TRIVIDRAFT_203741 [Trichoder... 59 5e-07
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 57 2e-06
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 62.4 bits (150), Expect = 4e-08
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Frame = -2
Query: 341 WASPGKKD---KSDETGWGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDKT 171
W S KK+ +SD WGS K + + G G + ++ET++ + A+WG +
Sbjct: 1447 WGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETES-NGATWGSSDKTK 1505
Query: 170 DTPASWGSFGKKDVE---PTGSWGSFGKKDAAANETQAGSSA--SWGKAVDKTDT-PASW 9
A+W S+ KK++E +WGS GKK+ +ET++G +A +W K +T+ PA W
Sbjct: 1506 SGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESGPAAWGAWDKKKSETEPGPAGW 1562
Query: 8 G 6
G
Sbjct: 1563 G 1563
Score = 57.0 bits (136), Expect = 2e-06
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = -2
Query: 344 SWASPGKKDKSDETGWGSFGKKDVEPTG---SWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S K KS W S+ KK++E +WGS GKK+ +ET++G
Sbjct: 1497 TWGS-SDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESG----------- 1541
Query: 173 TDTPASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT---PASWGS 3
PA+WG++ KK E +G D +ET+ G +A K+DT PA+WGS
Sbjct: 1542 ---PAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGS 1598
Score = 54.7 bits (130), Expect = 8e-06
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Frame = -2
Query: 344 SWASPGKKDKSDETG---WGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S GKK+ E+G WG++ KK E +G D +ET+ G +A K
Sbjct: 1527 AWGSQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKK 1586
Query: 173 TDT---PASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT----PA 15
+DT PA+WGS +WGS K + +ET++ +A+WG KT
Sbjct: 1587 SDTKSGPAAWGS------TDAAAWGSSDKNN---SETES-DAAAWGSRNKKTSEIESGAG 1636
Query: 14 SWGS 3
+WGS
Sbjct: 1637 AWGS 1640
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=Protein DEFECTIVE IN MERISTEM SILENCING 5;
AltName: Full=Protein DEFECTIVE IN RNA-DIRECTED DNA
METHYLATION 3; AltName: Full=Protein RNA-DIRECTED DNA
METHYLATION DEFECTIVE 1; AltName: Full=RNA polymerase IV
subunit 1; Short=POL IV 1 gi|59939210|gb|AAX12373.1|
DNA-directed RNA polymerase alpha subunit [Arabidopsis
thaliana] gi|62822917|gb|AAY15198.1| DNA-dependent RNA
polymerase large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 62.4 bits (150), Expect = 4e-08
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Frame = -2
Query: 341 WASPGKKD---KSDETGWGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDKT 171
W S KK+ +SD WGS K + + G G + ++ET++ + A+WG +
Sbjct: 1447 WGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETES-NGATWGSSDKTK 1505
Query: 170 DTPASWGSFGKKDVE---PTGSWGSFGKKDAAANETQAGSSA--SWGKAVDKTDT-PASW 9
A+W S+ KK++E +WGS GKK+ +ET++G +A +W K +T+ PA W
Sbjct: 1506 SGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESGPAAWGAWDKKKSETEPGPAGW 1562
Query: 8 G 6
G
Sbjct: 1563 G 1563
Score = 57.0 bits (136), Expect = 2e-06
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = -2
Query: 344 SWASPGKKDKSDETGWGSFGKKDVEPTG---SWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S K KS W S+ KK++E +WGS GKK+ +ET++G
Sbjct: 1497 TWGS-SDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESG----------- 1541
Query: 173 TDTPASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT---PASWGS 3
PA+WG++ KK E +G D +ET+ G +A K+DT PA+WGS
Sbjct: 1542 ---PAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGS 1598
Score = 54.7 bits (130), Expect = 8e-06
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Frame = -2
Query: 344 SWASPGKKDKSDETG---WGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S GKK+ E+G WG++ KK E +G D +ET+ G +A K
Sbjct: 1527 AWGSQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKK 1586
Query: 173 TDT---PASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT----PA 15
+DT PA+WGS +WGS K + +ET++ +A+WG KT
Sbjct: 1587 SDTKSGPAAWGS------TDAAAWGSSDKNN---SETES-DAAAWGSRNKKTSEIESGAG 1636
Query: 14 SWGS 3
+WGS
Sbjct: 1637 AWGS 1640
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 62.4 bits (150), Expect = 4e-08
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Frame = -2
Query: 341 WASPGKKD---KSDETGWGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDKT 171
W S KK+ +SD WGS K + + G G + ++ET++ + A+WG +
Sbjct: 310 WGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETES-NGATWGSSDKTK 368
Query: 170 DTPASWGSFGKKDVE---PTGSWGSFGKKDAAANETQAGSSA--SWGKAVDKTDT-PASW 9
A+W S+ KK++E +WGS GKK+ +ET++G +A +W K +T+ PA W
Sbjct: 369 SGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESGPAAWGAWDKKKSETEPGPAGW 425
Query: 8 G 6
G
Sbjct: 426 G 426
Score = 57.0 bits (136), Expect = 2e-06
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = -2
Query: 344 SWASPGKKDKSDETGWGSFGKKDVEPTG---SWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S K KS W S+ KK++E +WGS GKK+ +ET++G
Sbjct: 360 TWGS-SDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKN---SETESG----------- 404
Query: 173 TDTPASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT---PASWGS 3
PA+WG++ KK E +G D +ET+ G +A K+DT PA+WGS
Sbjct: 405 ---PAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGS 461
Score = 54.7 bits (130), Expect = 8e-06
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Frame = -2
Query: 344 SWASPGKKDKSDETG---WGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWGKAVDK 174
+W S GKK+ E+G WG++ KK E +G D +ET+ G +A K
Sbjct: 390 AWGSQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKK 449
Query: 173 TDT---PASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSASWGKAVDKTDT----PA 15
+DT PA+WGS +WGS K + +ET++ +A+WG KT
Sbjct: 450 SDTKSGPAAWGS------TDAAAWGSSDKNN---SETES-DAAAWGSRNKKTSEIESGAG 499
Query: 14 SWGS 3
+WGS
Sbjct: 500 AWGS 503
>gb|EHK19641.1| hypothetical protein TRIVIDRAFT_203741 [Trichoderma virens Gv29-8]
Length = 120
Score = 58.5 bits (140), Expect = 5e-07
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Frame = -2
Query: 275 VEPTGSWGSFGKKDVAANETQAGSSASWGK---AVDKTDTPASWGSFGKKD--VEPTGSW 111
V+PT + +G++ A + T + A WGK AVD T+ A WG ++D V+PT +
Sbjct: 29 VDPTNNQAGWGRRGTAVDPTN--NQAGWGKRGTAVDPTNNQAGWG---RRDTAVDPTNNQ 83
Query: 110 GSFGKKDAAANETQAGSSASWGK---AVDKTDTPASWG 6
+GK+D A + T + A WG+ AVD T+ A WG
Sbjct: 84 AGWGKRDTAVDPTN--NQAGWGRRGTAVDPTNNQAGWG 119
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 57.0 bits (136), Expect = 2e-06
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = -2
Query: 347 GSWASPGKKDKSDETGWGSFGKKDVEPTGSWGSFGKKDVAANETQAGSSASWG-KAVDKT 171
G W K +SD WGS K +W S+ KK++ + A+WG ++ +K
Sbjct: 1482 GPWNKKSSKTESDGATWGS-SDKTKSGAAAWSSWDKKNMETDS----EPAAWGSQSKNKP 1536
Query: 170 DT---PASWGSFGKKDVEPTGSWGSFGKKDAAANETQAGSSA--SWGKAVDKTDT-PASW 9
+T P++WG++ K E +G D +ET++G +A +W K T++ PA+W
Sbjct: 1537 ETESGPSTWGAWDTKKSETESGPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAW 1596
Query: 8 GS 3
GS
Sbjct: 1597 GS 1598