BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00016829
         (3241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1326   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1325   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1325   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1301   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1299   0.0  

>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1326 bits (3431), Expect = 0.0
 Identities = 667/993 (67%), Positives = 797/993 (80%), Gaps = 15/993 (1%)
 Frame = -3

Query: 3185 LASSTLFSPSPRADFQSPWSTKNVKPRTPQKPTLHLFKNQ-----SQTPLIYSSSFPHNL 3021
            +AS+  +SPSP     S W T+ +    P++   ++  NQ     SQ+  + +SSFP  L
Sbjct: 1    MASTASYSPSPT----SQWRTQKL----PKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTL 52

Query: 3020 KLPSLKDPISSTHSHPLPDSVDENFTKNLENLATLQRITHG-LDSVSNSEIKQKRVFIQE 2844
            KLP +  PI++  S     +V  +  +NLE L  LQ+I +G L+  SN     KRVFIQ+
Sbjct: 53   KLPVIHMPINNIQSQT---TVCVSTDENLEELVNLQKIPNGFLNKESN-----KRVFIQD 104

Query: 2843 PPWITSLLMKNFYRNSVK----KRVKVEIERRNYY-LLRRRQIKAETEAWEKMTEEYREF 2679
            PPW++SL M + +  + +    +R   EIERR  Y +LRRRQIKAETEAWE+M EEYRE 
Sbjct: 105  PPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYREL 164

Query: 2678 QREMCEKKLAPNLPYVKALFAGWFEPLSKAIEKEQKSPNSKKHQEAYAPYIDSLPADKMA 2499
            +REMCEKKLAPNLPYVK L  GWFEPL +AIEKEQ +  + KH+ A+AP+IDSLPADKMA
Sbjct: 165  EREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMA 224

Query: 2498 VIVXXXXXXXXXXXH-EYRYVRVVQAAIQIGMAVELEVRIQTFLERTKNSSKKKVLIQAQ 2322
            VIV             E R V+VVQAA+QIGMAVE EVRI  FLE+TK   K     Q+Q
Sbjct: 225  VIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQ 284

Query: 2321 EDVTKENEMXXXXXXXXXXXXXIMEVQKILRNEEYQLWGRDKQAKLGCRLIELLTEIAYV 2142
            ED++KE  +             ++EV+K++++EE + WGRD QAKLGCRL+ELLTE AYV
Sbjct: 285  EDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYV 344

Query: 2141 QSPASQSADAPPDIRPAFRHIFKIVAMESGH--VRKCGVIECDKMILIGLEKTARHMIIP 1968
            Q P  QSAD PPDIRPAFRH+FKI   + G   V+K GVIECD +++ G+++T + M+IP
Sbjct: 345  QRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIP 404

Query: 1967 YVPMLVPPRKWKGYDCGGHFFLPSYLMRTHGSRQQQEAVKTVPFTQMQKVYEALDTLGNT 1788
            YVPMLVPP+KW+GYD GG+ FLPSYLMRTHGSR+QQ+AV+ VP  QMQ+VYEALDTLG+T
Sbjct: 405  YVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGST 464

Query: 1787 KWRVNKRLLNVVESIWAAGGDVAGLVNREDVSVPDL-NSEDLSEIREWRWSVRKAKKINQ 1611
            KWRVNKR+LNVVESIWA GG++AGLV+R+DV +P+L NS+D+ E+++W+W VRK+KKINQ
Sbjct: 465  KWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQ 524

Query: 1610 ELHSQRCDIELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1431
            ELHSQRCD ELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE
Sbjct: 525  ELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 584

Query: 1430 GRSLGKSGLRWLRIHLANLYGAGVEKLSYDGRLEFVENHLNDIIDSADNPLGGNRWWLTA 1251
            GR LGKSGLRWL+IHLA+LY  GVEKL YD RL FVENH++DI+DSA+NPL GNRWWL A
Sbjct: 585  GRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNA 644

Query: 1250 EDPFQCLAACINLSETLKSPSPHTVISHLPVHQDGSCNGLQHYXXXXXXXXXXXAVNLVA 1071
            EDPFQCLAACINLSE LKS SPHTVISHLP+HQDGSCNGLQHY           AVNLVA
Sbjct: 645  EDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVA 704

Query: 1070 GEKPSDVYSEIAARVHDIMQSDSEKDPTSYPNALLARVLIGQVNRKLVKQTVMTSVYGVT 891
            GEKP+DVY+EIA RV  I++ DS KDP   PNALLA++LI QV+RKLVKQTVMTSVYGVT
Sbjct: 705  GEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVT 764

Query: 890  FIGAREQIKRRLLEKGHITDDQLLFSASCYAAKVTLEALGEIFEAARGTMCWLGDCAKVI 711
            ++GAREQIKRRL EKG I DD+LLF+ASCYAAKVTL ALGE+F+AARGTM WLGDCAKVI
Sbjct: 765  YVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVI 824

Query: 710  ASENQPVRWTTPLGLPVVQPYFKTKRHIIKTSLQVLALQREGGMVDVKKQRTAFPPNFVH 531
            A ENQPVRWTTPLGLPVVQPYFKT+RH+I+TSLQ+LALQREG  V+V+KQRTAFPPNFVH
Sbjct: 825  ALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVH 884

Query: 530  SLDGTHMMMTALACRDAGLRFAGVHDSFWTHACDIDKMNQILREKFVELYNIPILENLLE 351
            SLDG+HMMMTA+ACRDAGL+FAGVHDSFWTHACD+D+MN+ILREKFVELY++PILE+LLE
Sbjct: 885  SLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLE 944

Query: 350  SFQTTYPGVEFPPLPKRGNFDLNEVLKSPYFFN 252
            +FQ +YP + FPPLPKRG+F+L EVL+SPYFFN
Sbjct: 945  NFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 660/991 (66%), Positives = 798/991 (80%), Gaps = 13/991 (1%)
 Frame = -3

Query: 3185 LASSTLFSPSPRADFQSPWSTKNVKPRTPQKPTLHLFKNQ-----SQTPLIYSSSFPHNL 3021
            +AS+  +SPSP     S W T+ +    P++   ++  NQ     SQ+  + +SSFP  L
Sbjct: 1    MASTASYSPSPT----SQWRTQKL----PKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTL 52

Query: 3020 KLPSLKDPISSTHSHPLPDSVDENFTKNLENLATLQRITHGLDSVSNSEIKQKRVFIQEP 2841
            KLP ++ PI++         V  +  +NLE L  LQ+I +G+ +  ++    KRVFIQ+P
Sbjct: 53   KLPVIQMPINNNIQSQTTVCVSTD--ENLEELVNLQKIANGVLTKESN----KRVFIQDP 106

Query: 2840 PWITSLLMKNFYRNSVK----KRVKVEIERRNYY-LLRRRQIKAETEAWEKMTEEYREFQ 2676
            PW++SL M + +  + +    +R   EIERR  Y +LRRRQIKAETEAWE+M EEYRE +
Sbjct: 107  PWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELE 166

Query: 2675 REMCEKKLAPNLPYVKALFAGWFEPLSKAIEKEQKSPNSKKHQEAYAPYIDSLPADKMAV 2496
            REMCEKKLAPNLPYVK L  GWFEPL +AIEKEQ +  + KH+ A+AP+IDSLPADKMAV
Sbjct: 167  REMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAV 226

Query: 2495 IVXXXXXXXXXXXH-EYRYVRVVQAAIQIGMAVELEVRIQTFLERTKNSSKKKVLIQAQE 2319
            IV             E R V+VVQAA+QIGMAVE EVRI  FLE+TK   K     Q+QE
Sbjct: 227  IVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQE 286

Query: 2318 DVTKENEMXXXXXXXXXXXXXIMEVQKILRNEEYQLWGRDKQAKLGCRLIELLTEIAYVQ 2139
            D+++E  +             ++EV+K++++EE + WGRD QAKLGCRL+ELLTE AYVQ
Sbjct: 287  DMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQ 346

Query: 2138 SPASQSADAPPDIRPAFRHIFKIVAMESGH--VRKCGVIECDKMILIGLEKTARHMIIPY 1965
             P  QSAD PPDIRPAFRH+F+I   + G   V+K GVIECD +++ G+++T + M+IPY
Sbjct: 347  PPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPY 406

Query: 1964 VPMLVPPRKWKGYDCGGHFFLPSYLMRTHGSRQQQEAVKTVPFTQMQKVYEALDTLGNTK 1785
            VPMLVPP+KW+GYD GG+ FLPSYLMRTHGSR+QQ+AV++VP  QMQ+VYEALDTLG+TK
Sbjct: 407  VPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTK 466

Query: 1784 WRVNKRLLNVVESIWAAGGDVAGLVNREDVSVPDLNSEDLSEIREWRWSVRKAKKINQEL 1605
            WRVNKR+L+VVESIWA GG++AGLV+R+DV +P+L+S+D+ E+++W+W VRK+KKINQEL
Sbjct: 467  WRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQEL 526

Query: 1604 HSQRCDIELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGR 1425
            HSQRCD ELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGR
Sbjct: 527  HSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGR 586

Query: 1424 SLGKSGLRWLRIHLANLYGAGVEKLSYDGRLEFVENHLNDIIDSADNPLGGNRWWLTAED 1245
             LGKSGLRWL+IHLA+LY  G+EKL YD RL FVENH++DI+DSA+NPL GNRWWL AED
Sbjct: 587  PLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAED 646

Query: 1244 PFQCLAACINLSETLKSPSPHTVISHLPVHQDGSCNGLQHYXXXXXXXXXXXAVNLVAGE 1065
            PFQCLAACINLSE LKS SPHTV SHLP+HQDGSCNGLQHY           AVNLVAG+
Sbjct: 647  PFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGD 706

Query: 1064 KPSDVYSEIAARVHDIMQSDSEKDPTSYPNALLARVLIGQVNRKLVKQTVMTSVYGVTFI 885
            KP+DVY+EIA RV  I++ DS KDP + PNALLA++LI QV+RKLVKQTVMTSVYGVT++
Sbjct: 707  KPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYV 766

Query: 884  GAREQIKRRLLEKGHITDDQLLFSASCYAAKVTLEALGEIFEAARGTMCWLGDCAKVIAS 705
            GAREQIKRRL EKG I DD+LLF+ASCYAAKVTL ALGE+F+AARGTM WLGDCAKVIAS
Sbjct: 767  GAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIAS 826

Query: 704  ENQPVRWTTPLGLPVVQPYFKTKRHIIKTSLQVLALQREGGMVDVKKQRTAFPPNFVHSL 525
            ENQPVRWTTPLGLPVVQPYFKT+RH+I+TSLQVLALQREG  V+V+KQRTAFPPNFVHSL
Sbjct: 827  ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSL 886

Query: 524  DGTHMMMTALACRDAGLRFAGVHDSFWTHACDIDKMNQILREKFVELYNIPILENLLESF 345
            DG+HMMMTA+ACRDAGL+FAGVHDSFWTHACD+D+MN+ILREKFVELY++PILE+LLESF
Sbjct: 887  DGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESF 946

Query: 344  QTTYPGVEFPPLPKRGNFDLNEVLKSPYFFN 252
            Q +YP + FPPLPKRG+FDL EVL+SPYFFN
Sbjct: 947  QNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1325 bits (3429), Expect = 0.0
 Identities = 671/994 (67%), Positives = 790/994 (79%), Gaps = 16/994 (1%)
 Frame = -3

Query: 3185 LASSTLFSPSPRADFQSPWSTKNVKPRTP------QKPTLHLFKNQSQTPLIYSSSFPHN 3024
            +AS+ +F P P A  Q P    + KP           P+ H   +      + SSSF HN
Sbjct: 1    MASTAVFLPIPHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTSTISKNSLSSSSFRHN 60

Query: 3023 LKLPSLKDPISSTHSHPLPDSVDENFTKNLENLATLQRITHGLDSVSNSEIKQK--RVFI 2850
               PS     S    H LP S   N      ++ TLQ      DS SN ++K+   R+F+
Sbjct: 61   FHSPSHSSN-SEAQCHALPLSPTNN------SIETLQ------DS-SNIQVKESIPRIFV 106

Query: 2849 QEPPWITSLLMKNFYRNSVK--KRVKVEI---ERRNYYLLRRRQIKAETEAWEKMTEEYR 2685
            Q+PPWI+S L  ++   + +  + VK+E    ERRNY LLRRRQ+KAETEAWE+M EEYR
Sbjct: 107  QDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYR 166

Query: 2684 EFQREMCEKKLAPNLPYVKALFAGWFEPLSKAIEKEQKSPNSKKHQEAYAPYIDSLPADK 2505
            E +REMCEKKLAPNLPYVKALF GWFEPL +AI+KEQ++  +KK + AYAP+I+ LPADK
Sbjct: 167  EIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADK 226

Query: 2504 MAVIVXXXXXXXXXXXHEYRYVRVVQAAIQIGMAVELEVRIQTFLERTKNSSKKKVLIQA 2325
            MAVIV           HE   VRVVQAA+QIGMA+E EVRI +FLE+TKN  + K +  +
Sbjct: 227  MAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHS 286

Query: 2324 QEDVTKENEMXXXXXXXXXXXXXIMEVQKILRNEEYQLWGRDKQAKLGCRLIELLTEIAY 2145
            QE + +E E+             I+EVQK+++NEE   WGRD QAKLG RLIELLTE AY
Sbjct: 287  QEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAY 345

Query: 2144 VQSPASQSADAPPDIRPAFRHIFKIVAMESGHV--RKCGVIECDKMILIGLEKTARHMII 1971
            VQ+P +QSAD PPD+RPAFRH FK V  ESG    RK GVIECD ++LIGL++TA+HM+I
Sbjct: 346  VQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVI 405

Query: 1970 PYVPMLVPPRKWKGYDCGGHFFLPSYLMRTHGSRQQQEAVKTVPFTQMQKVYEALDTLGN 1791
            PYVPML+PP+KWKGYD GG+ FLPSY+MRTHGSR+QQ+AVK+VP  Q+QKV+EALDTLGN
Sbjct: 406  PYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGN 465

Query: 1790 TKWRVNKRLLNVVESIWAAGGDVAGLVNREDVSVPDLNS-EDLSEIREWRWSVRKAKKIN 1614
            TKWR+N+R+L+VVESIWA GG++ GLV+RE+V +P+  S EDL+EI+ W+W+ RKAKKIN
Sbjct: 466  TKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKIN 525

Query: 1613 QELHSQRCDIELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1434
            QE HS RCD E+KLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 526  QERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 585

Query: 1433 EGRSLGKSGLRWLRIHLANLYGAGVEKLSYDGRLEFVENHLNDIIDSADNPLGGNRWWLT 1254
            EGR LGKSGLRWL+I LANLY  GVEKLSYDGRL FV+NHL+D+ DSADNPL GNRWWLT
Sbjct: 586  EGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLT 645

Query: 1253 AEDPFQCLAACINLSETLKSPSPHTVISHLPVHQDGSCNGLQHYXXXXXXXXXXXAVNLV 1074
            AEDPFQCLAACINLSE L+S SPHTVISHLP+HQDGSCNGLQHY           AVNLV
Sbjct: 646  AEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLV 705

Query: 1073 AGEKPSDVYSEIAARVHDIMQSDSEKDPTSYPNALLARVLIGQVNRKLVKQTVMTSVYGV 894
            AGEKP+DVYSEIAARVH+IM+ DS KDP + P ALLA+VLIGQV+RKLVKQTVMTSVYGV
Sbjct: 706  AGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGV 765

Query: 893  TFIGAREQIKRRLLEKGHITDDQLLFSASCYAAKVTLEALGEIFEAARGTMCWLGDCAKV 714
            T+IGAREQIKRRL EKG ITD++LLF+A+CYAAKVTL ALGEIF+AAR  M WLG+CAKV
Sbjct: 766  TYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKV 825

Query: 713  IASENQPVRWTTPLGLPVVQPYFKTKRHIIKTSLQVLALQREGGMVDVKKQRTAFPPNFV 534
            IASENQPV+WTTPLGLPV+QPY K++RH+I+TSLQVLALQREG +V ++KQRTAFPPNFV
Sbjct: 826  IASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFV 885

Query: 533  HSLDGTHMMMTALACRDAGLRFAGVHDSFWTHACDIDKMNQILREKFVELYNIPILENLL 354
            HSLDG+HMMMTA+ACRDAGL FAGVHDSFWTHACD+DKMNQILREKFVELY++PILENLL
Sbjct: 886  HSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLL 945

Query: 353  ESFQTTYPGVEFPPLPKRGNFDLNEVLKSPYFFN 252
            ESFQT++P + FPPLP RGNFDL EVL+SPYFFN
Sbjct: 946  ESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1301 bits (3366), Expect = 0.0
 Identities = 650/960 (67%), Positives = 773/960 (80%), Gaps = 11/960 (1%)
 Frame = -3

Query: 3098 QKPTLHLFKNQSQTPLIYSSSFPHNLKLPSLKDPIS------STHSHPLPDSVDENFTKN 2937
            +KPT   +K + +T   ++S+F  N  L S+  P++      S H  PL DSV ENFT+ 
Sbjct: 22   KKPTKR-WKCERKTHPSFTSTF--NSPLSSVSFPVNFDSTSQSLHLQPLADSVHENFTET 78

Query: 2936 LENLATLQRITHGLDSVSNSEIKQKRVFIQEPPWITSLLMKNFYRNSVKKRVKVE---IE 2766
            L+N   LQ     +  ++  E   KR+FIQ+PPWI SL +K  Y+  V+K VK+E   IE
Sbjct: 79   LDNSMNLQIPISEIHQITRGE-SSKRIFIQDPPWIASLFLKGLYK-CVQKEVKLEFMEIE 136

Query: 2765 RRNYYLLRRRQIKAETEAWEKMTEEYREFQREMCEKKLAPNLPYVKALFAGWFEPLSKAI 2586
            +R Y LLRRRQIKAETEAWEKM EEY+E +REMCEKKLAPNLPYVK LF GWFEPL  AI
Sbjct: 137  KRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAI 196

Query: 2585 EKEQKSPNSKKHQEAYAPYIDSLPADKMAVIVXXXXXXXXXXXHEYRYVRVVQAAIQIGM 2406
            E+EQK+  SKK + A+AP+I+ L ADKMAVIV            +   V+VVQAA+QIG 
Sbjct: 197  EEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGG 256

Query: 2405 AVELEVRIQTFLERTKNSSKKKVLIQAQEDVTKENEMXXXXXXXXXXXXXIMEVQKILRN 2226
            A+E EVRIQ+ LE+ +++ + KV     E +TKE E+             + EVQK+L+ 
Sbjct: 257  AIEQEVRIQSILEKARSNQRTKVRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKK 315

Query: 2225 EEYQLWGRDKQAKLGCRLIELLTEIAYVQSPASQSADAPPDIRPAFRHIFKIVAMESGH- 2049
            EE++ WGRD QAKLG RLIELL E A++Q P SQSAD+PPDIRPAF H FK VA   G  
Sbjct: 316  EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQN 375

Query: 2048 -VRKCGVIECDKMILIGLEKTARHMIIPYVPMLVPPRKWKGYDCGGHFFLPSYLMRTHGS 1872
             V+K GV+ECD ++L GL++TA+HM+IPY+PMLVPP+KWKGYD GGHFFLPSY+MRTHGS
Sbjct: 376  FVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGS 435

Query: 1871 RQQQEAVKTVPFTQMQKVYEALDTLGNTKWRVNKRLLNVVESIWAAGGDVAGLVNREDVS 1692
             +QQ+A+K +   QMQKV+EALD LG+TKWRVN+ +L+VVES+WA GG+ AGLV+R+DV 
Sbjct: 436  SRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVP 495

Query: 1691 VPDLNSEDLSEIREWRWSVRKAKKINQELHSQRCDIELKLSVARRMKDEEGFYYPHNLDF 1512
            +P+    DL+E++EWRWS++KAKKINQELHSQRCD+ELKLSVAR+MKDEEGFYYPHNLDF
Sbjct: 496  IPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDF 555

Query: 1511 RGRAYPMHPHLNHLSSDLCRGILEFAEGRSLGKSGLRWLRIHLANLYGAGVEKLSYDGRL 1332
            RGRAYPMHPHLNHLSSDLCRG+LEFAEGR LGKSGL WL+IHLANLY  GVEKLSYD RL
Sbjct: 556  RGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERL 615

Query: 1331 EFVENHLNDIIDSADNPLGGNRWWLTAEDPFQCLAACINLSETLKSPSPHTVISHLPVHQ 1152
             FV++HL++I DSA NP+ G+RWWLTAEDPFQCLAAC+NLSE LKS +PHTVIS+LP+HQ
Sbjct: 616  AFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQ 675

Query: 1151 DGSCNGLQHYXXXXXXXXXXXAVNLVAGEKPSDVYSEIAARVHDIMQSDSEKDPTSYPNA 972
            DGSCNGLQHY           AVNLVAGEKP+DVYSEIAARVH IM  D+ KDPT+ PNA
Sbjct: 676  DGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNA 735

Query: 971  LLARVLIGQVNRKLVKQTVMTSVYGVTFIGAREQIKRRLLEKGHITDDQLLFSASCYAAK 792
             LA++LI QV+RKLVKQTVMTSVYGVT+IGAREQIKRRL EKG I+DD+L F ASCYAAK
Sbjct: 736  SLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAK 795

Query: 791  VTLEALGEIFEAARGTMCWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTKRHIIKTSL 612
            VTL ALGEIFEAARG M WLGDCAKVIA +NQPVRWTTPLGLPVVQPY+K++RH+I+TSL
Sbjct: 796  VTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSL 855

Query: 611  QVLALQREGGMVDVKKQRTAFPPNFVHSLDGTHMMMTALACRDAGLRFAGVHDSFWTHAC 432
            QVLALQREG +VDV+KQRTAFPPNFVHSLDG+HMM+TALACRDAGLRFAGVHDSFWTHAC
Sbjct: 856  QVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHAC 915

Query: 431  DIDKMNQILREKFVELYNIPILENLLESFQTTYPGVEFPPLPKRGNFDLNEVLKSPYFFN 252
            D+D+MN ILREKFVELY++P+LE+LLE F+TTYPG+ FP LP RG+FDL EVLKSPYFFN
Sbjct: 916  DVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1299 bits (3361), Expect = 0.0
 Identities = 649/960 (67%), Positives = 772/960 (80%), Gaps = 11/960 (1%)
 Frame = -3

Query: 3098 QKPTLHLFKNQSQTPLIYSSSFPHNLKLPSLKDPIS------STHSHPLPDSVDENFTKN 2937
            +KPT   +K + +T   ++S+F  N  L S+  P++      S H  PL DSV ENFT+ 
Sbjct: 22   KKPTKR-WKCERKTHTSFTSTF--NSPLSSVSFPVNFDSTSQSLHLQPLADSVHENFTET 78

Query: 2936 LENLATLQRITHGLDSVSNSEIKQKRVFIQEPPWITSLLMKNFYRNSVKKRVKVE---IE 2766
            L+N   LQ     +  ++  E   KR+FIQ+PPWI SL +K  Y+  V+K VK+E   IE
Sbjct: 79   LDNSMNLQIPISEIHQITRGE-SSKRIFIQDPPWIASLFLKGLYK-CVQKEVKLEFMEIE 136

Query: 2765 RRNYYLLRRRQIKAETEAWEKMTEEYREFQREMCEKKLAPNLPYVKALFAGWFEPLSKAI 2586
            +R Y LLRRRQIKAETEAWEKM EEY+E +REMCEKKLAPNLPYVK LF GWFEPL  AI
Sbjct: 137  KRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAI 196

Query: 2585 EKEQKSPNSKKHQEAYAPYIDSLPADKMAVIVXXXXXXXXXXXHEYRYVRVVQAAIQIGM 2406
            E+EQK+  SKK + A+AP+I+ L ADKMA IV            +   V+VVQAA+QIG 
Sbjct: 197  EEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGG 256

Query: 2405 AVELEVRIQTFLERTKNSSKKKVLIQAQEDVTKENEMXXXXXXXXXXXXXIMEVQKILRN 2226
            A+E EVRIQ+ LE+ +++ + KV     E +TKE E+             + EVQK+L+ 
Sbjct: 257  AIEQEVRIQSILEKARSNQRTKVRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKK 315

Query: 2225 EEYQLWGRDKQAKLGCRLIELLTEIAYVQSPASQSADAPPDIRPAFRHIFKIVAMESGH- 2049
            EE++ WGRD QAKLG RLIELL E A++Q P SQSAD+PPDIRPAF H FK VA   G  
Sbjct: 316  EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQN 375

Query: 2048 -VRKCGVIECDKMILIGLEKTARHMIIPYVPMLVPPRKWKGYDCGGHFFLPSYLMRTHGS 1872
             V+K GV+ECD ++L GL++TA+HM+IPY+PMLVPP+KWKGYD GGHFFLPSY+MRTHGS
Sbjct: 376  FVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGS 435

Query: 1871 RQQQEAVKTVPFTQMQKVYEALDTLGNTKWRVNKRLLNVVESIWAAGGDVAGLVNREDVS 1692
             +QQ+A+K +   QMQKV+EALD LG+TKWRVN+ +L+VVES+WA GG+ AGLV+R+DV 
Sbjct: 436  SRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVP 495

Query: 1691 VPDLNSEDLSEIREWRWSVRKAKKINQELHSQRCDIELKLSVARRMKDEEGFYYPHNLDF 1512
            +P+    DL+E++EWRWS++KAKKINQELHSQRCD+ELKLSVAR+MKDEEGFYYPHNLDF
Sbjct: 496  IPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDF 555

Query: 1511 RGRAYPMHPHLNHLSSDLCRGILEFAEGRSLGKSGLRWLRIHLANLYGAGVEKLSYDGRL 1332
            RGRAYPMHPHLNHLSSDLCRG+LEFAEGR LGKSGL WL+IHLANLY  GVEKLSYD RL
Sbjct: 556  RGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERL 615

Query: 1331 EFVENHLNDIIDSADNPLGGNRWWLTAEDPFQCLAACINLSETLKSPSPHTVISHLPVHQ 1152
             FV++HL++I DSA NP+ G+RWWLTAEDPFQCLAAC+NLSE LKS +PHTVIS+LP+HQ
Sbjct: 616  AFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQ 675

Query: 1151 DGSCNGLQHYXXXXXXXXXXXAVNLVAGEKPSDVYSEIAARVHDIMQSDSEKDPTSYPNA 972
            DGSCNGLQHY           AVNLVAGEKP+DVYSEIAARVH IM  D+ KDPT+ PNA
Sbjct: 676  DGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNA 735

Query: 971  LLARVLIGQVNRKLVKQTVMTSVYGVTFIGAREQIKRRLLEKGHITDDQLLFSASCYAAK 792
             LA++LI QV+RKLVKQTVMTSVYGVT+IGAREQIKRRL EKG I+DD+L F ASCYAAK
Sbjct: 736  SLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAK 795

Query: 791  VTLEALGEIFEAARGTMCWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTKRHIIKTSL 612
            VTL ALGEIFEAARG M WLGDCAKVIA +NQPVRWTTPLGLPVVQPY+K++RH+I+TSL
Sbjct: 796  VTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSL 855

Query: 611  QVLALQREGGMVDVKKQRTAFPPNFVHSLDGTHMMMTALACRDAGLRFAGVHDSFWTHAC 432
            QVLALQREG +VDV+KQRTAFPPNFVHSLDG+HMM+TALACRDAGLRFAGVHDSFWTHAC
Sbjct: 856  QVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHAC 915

Query: 431  DIDKMNQILREKFVELYNIPILENLLESFQTTYPGVEFPPLPKRGNFDLNEVLKSPYFFN 252
            D+D+MN ILREKFVELY++P+LE+LLE F+TTYPG+ FP LP RG+FDL EVLKSPYFFN
Sbjct: 916  DVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975