BLASTX nr result

ID: Atractylodes22_contig00015606 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00015606
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527858.1| chloride channel clc, putative [Ricinus comm...    79   4e-13
ref|XP_002865761.1| CLC-C [Arabidopsis lyrata subsp. lyrata] gi|...    78   8e-13
ref|NP_199800.1| chloride channel protein CLC-c [Arabidopsis tha...    78   8e-13
ref|XP_002331119.1| Cl-channel clc-7 [Populus trichocarpa] gi|22...    77   2e-12
ref|XP_004155280.1| PREDICTED: chloride channel protein CLC-c-li...    76   3e-12

>ref|XP_002527858.1| chloride channel clc, putative [Ricinus communis]
           gi|223532782|gb|EEF34561.1| chloride channel clc,
           putative [Ricinus communis]
          Length = 754

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 33/38 (86%), Positives = 37/38 (97%)
 Frame = +2

Query: 2   LCVVPKTPGRPPIVGILTRHDFMPQHILGLYPGLDPHK 115
           LCVVPKTPGRPPIVGILTRHDF+P+HILGLYP ++PHK
Sbjct: 717 LCVVPKTPGRPPIVGILTRHDFVPEHILGLYPHINPHK 754


>ref|XP_002865761.1| CLC-C [Arabidopsis lyrata subsp. lyrata]
           gi|297311596|gb|EFH42020.1| CLC-C [Arabidopsis lyrata
           subsp. lyrata]
          Length = 778

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 33/38 (86%), Positives = 36/38 (94%)
 Frame = +2

Query: 2   LCVVPKTPGRPPIVGILTRHDFMPQHILGLYPGLDPHK 115
           LCVVPKTPGRPPIVGILTRHDFMP+H+LGLYP +DP K
Sbjct: 741 LCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIDPLK 778


>ref|NP_199800.1| chloride channel protein CLC-c [Arabidopsis thaliana]
           gi|41688510|sp|Q96282.1|CLCC_ARATH RecName:
           Full=Chloride channel protein CLC-c; Short=AtCLC-c;
           AltName: Full=CBS domain-containing protein CBSCLC4
           gi|1655536|emb|CAA70310.1| chloride channel [Arabidopsis
           thaliana] gi|1742957|emb|CAA96059.1| CLC-c chloride
           channel protein [Arabidopsis thaliana]
           gi|8777420|dbj|BAA97010.1| chloride channel [Arabidopsis
           thaliana] gi|21539519|gb|AAM53312.1| chloride channel
           [Arabidopsis thaliana] gi|24899767|gb|AAN65098.1|
           chloride channel [Arabidopsis thaliana]
           gi|332008485|gb|AED95868.1| chloride channel protein
           CLC-c [Arabidopsis thaliana]
          Length = 779

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 33/38 (86%), Positives = 36/38 (94%)
 Frame = +2

Query: 2   LCVVPKTPGRPPIVGILTRHDFMPQHILGLYPGLDPHK 115
           LCVVPKTPGRPPIVGILTRHDFMP+H+LGLYP +DP K
Sbjct: 742 LCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIDPLK 779


>ref|XP_002331119.1| Cl-channel clc-7 [Populus trichocarpa] gi|222872847|gb|EEF09978.1|
           Cl-channel clc-7 [Populus trichocarpa]
          Length = 743

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 33/38 (86%), Positives = 34/38 (89%)
 Frame = +2

Query: 2   LCVVPKTPGRPPIVGILTRHDFMPQHILGLYPGLDPHK 115
           LCVVPKTPGRPPIVGILTRHDF P HILGLYP + PHK
Sbjct: 706 LCVVPKTPGRPPIVGILTRHDFTPDHILGLYPHIKPHK 743


>ref|XP_004155280.1| PREDICTED: chloride channel protein CLC-c-like [Cucumis sativus]
          Length = 598

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +2

Query: 2   LCVVPKTPGRPPIVGILTRHDFMPQHILGLYPGLDPHK 115
           L VVPKTPGRPPI GILTRHDFMP+HILGLYP L+PHK
Sbjct: 561 LLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK 598


Top