BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00013224
         (1427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   498   e-138
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   495   e-137
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   494   e-137
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   493   e-137
gb|AAB82754.1| retrofit [Oryza longistaminata]                        487   e-135

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  498 bits (1282), Expect = e-138
 Identities = 244/427 (57%), Positives = 310/427 (72%), Gaps = 2/427 (0%)
 Frame = -1

Query: 1283 EWRQAMAEELSALHRNGTWTLVPPVSNANIVACKWVYRLKTDEHGKITRYKARLVAKGFN 1104
            +WR AM  E  AL +N TWTLVPP    N++ CKWV+++K +  G I R KARLVAKGF 
Sbjct: 936  QWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFK 995

Query: 1103 QQHGVDYHETFSPVIKPATIRTVLSLAVSNKWSIRQLDIQTAFLHGDLEETVYMHQPPGF 924
            QQ+G+DY +TFSPV+K +TIR VLSLAVS KWS+RQLD+Q AFLHG LEETVYM QPPGF
Sbjct: 996  QQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGF 1055

Query: 923  IDQTKPDHICLLHKSLYGLKQAPRAWFTKLSTALHQLGFYGSKTDPSLFILNSSGSLVYL 744
             D T P++ C L KSLYGLKQ PRAW+++LS  L  LGF  SK D SLFI N+  + +Y+
Sbjct: 1056 ADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYI 1115

Query: 743  LVYVDDIIITGNNSTAVASIIQKLDSLFALKDMGQLHYFLGVEVVHKGSDLVLSQRKYVR 564
            LVYVDDIIITG++  A+ +++ KL   FA+KD+G LHYFLG+EV  KG  L+L Q KY R
Sbjct: 1116 LVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYAR 1175

Query: 563  EILHRAGLADCKSISTPMSTSH--VXXXXXXXXXXXXSHYRQTVGALQYATLSRPDIAFA 390
            ++L R G+  CK + TP++TS                + YR  VGALQY TL+RPD+++A
Sbjct: 1176 DLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYA 1235

Query: 389  VNKVCQFMHAPTENHWAGVKRILRYLKGTIDLGLWIRHNTGYQLQAFSDSNWHSNLQAFS 210
            +N+VCQF+HAPT+ HW  VKRILR ++ TI LGL IR +                L AFS
Sbjct: 1236 INRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLM------------LSAFS 1283

Query: 209  DSDWAGCPVDRRSTGGFAIYLGSNLISWSARKQKTVSRSSTESEYKAIADTVAELIWLKS 30
            D+DWAGCP DR+STGG+A++LG NLISW+++KQ TVSRSSTE+EYKA+A+  AE+IWL+S
Sbjct: 1284 DADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQS 1343

Query: 29   LLRELGL 9
            LL ELG+
Sbjct: 1344 LLHELGI 1350


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  495 bits (1275), Expect = e-137
 Identities = 252/434 (58%), Positives = 307/434 (70%), Gaps = 2/434 (0%)
 Frame = -1

Query: 1298 ANKSLEWRQAMAEELSALHRNGTWTLVPPVSNANIVACKWVYRLKTDEHGKITRYKARLV 1119
            A K   W+ AM  E  AL +N TW LVPP    NI+ CKWVY++K    G + RYKARLV
Sbjct: 673  ALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLV 732

Query: 1118 AKGFNQQHGVDYHETFSPVIKPATIRTVLSLAVSNKWSIRQLDIQTAFLHGDLEETVYMH 939
            AKGF Q++G+DY +TFSPV+K ATIR +LSLAVS  WS+RQLD+Q AFLHG LEE VYM 
Sbjct: 733  AKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYML 792

Query: 938  QPPGFIDQTKPDHICLLHKSLYGLKQAPRAWFTKLSTALHQLGFYGSKTDPSLFILNSSG 759
            QPPGF D TKP H+C L K+LYGLKQAPRAWF++LS  L  LGF GSK D SLF LN   
Sbjct: 793  QPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGD 852

Query: 758  SLVYLLVYVDDIIITGNNSTAVASIIQKLDSLFALKDMGQLHYFLGVEVVHKGSDLVLSQ 579
              +++LVYVDDII+  ++  A A+++Q L   FALKD+G+LHYFLG+EV    + +VL+Q
Sbjct: 853  ITMFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQ 912

Query: 578  RKYVREILHRAGLADCKSISTPMSTSH--VXXXXXXXXXXXXSHYRQTVGALQYATLSRP 405
             KY  ++L + G+ DCK  +TP+S S                SHYR  VGALQY TL+RP
Sbjct: 913  DKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRP 972

Query: 404  DIAFAVNKVCQFMHAPTENHWAGVKRILRYLKGTIDLGLWIRHNTGYQLQAFSDSNWHSN 225
            DIAF+VNKVCQF+HAPT  HW  VKRILRYLK    LGL I H +G  L           
Sbjct: 973  DIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEI-HKSGSTL----------- 1020

Query: 224  LQAFSDSDWAGCPVDRRSTGGFAIYLGSNLISWSARKQKTVSRSSTESEYKAIADTVAEL 45
            +  FSD+DWAGC  DRRSTGGFAI+LGSNL+SW+ARKQ TVSRSSTESEYKAIA+  AE+
Sbjct: 1021 VSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEI 1080

Query: 44   IWLKSLLRELGLDS 3
            +W+++LL EL + S
Sbjct: 1081 MWVQTLLAELEIKS 1094


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  494 bits (1273), Expect = e-137
 Identities = 252/434 (58%), Positives = 307/434 (70%), Gaps = 2/434 (0%)
 Frame = -1

Query: 1298 ANKSLEWRQAMAEELSALHRNGTWTLVPPVSNANIVACKWVYRLKTDEHGKITRYKARLV 1119
            A K   W+ AM  E  AL +N TW LVPP    NI+ CKWVY++K    G + RYKARLV
Sbjct: 951  ALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLV 1010

Query: 1118 AKGFNQQHGVDYHETFSPVIKPATIRTVLSLAVSNKWSIRQLDIQTAFLHGDLEETVYMH 939
            AKGF Q++G+DY +TFSPV+K ATIR +LSLAVS  WS+RQLD+Q AFLHG LEE VYM 
Sbjct: 1011 AKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYML 1070

Query: 938  QPPGFIDQTKPDHICLLHKSLYGLKQAPRAWFTKLSTALHQLGFYGSKTDPSLFILNSSG 759
            QPPGF D TKP H+C L K+LYGLKQAPRAWF++LS  L  LGF GSK D SLF LN   
Sbjct: 1071 QPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGD 1130

Query: 758  SLVYLLVYVDDIIITGNNSTAVASIIQKLDSLFALKDMGQLHYFLGVEVVHKGSDLVLSQ 579
              +++LVYVDDII+  ++  A A+++Q L   FALKD+G+LHYFLG+EV    + +VL+Q
Sbjct: 1131 ITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQ 1190

Query: 578  RKYVREILHRAGLADCKSISTPMSTSH--VXXXXXXXXXXXXSHYRQTVGALQYATLSRP 405
             KY  ++L + G+ DCK  +TP+S S                SHYR  VGALQY TL+RP
Sbjct: 1191 DKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRP 1250

Query: 404  DIAFAVNKVCQFMHAPTENHWAGVKRILRYLKGTIDLGLWIRHNTGYQLQAFSDSNWHSN 225
            DIAF+VNKVCQF+HAPT  HW  VKRILRYLK    LGL I H +G  L           
Sbjct: 1251 DIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEI-HKSGSTL----------- 1298

Query: 224  LQAFSDSDWAGCPVDRRSTGGFAIYLGSNLISWSARKQKTVSRSSTESEYKAIADTVAEL 45
            +  FSD+DWAGC  DRRSTGGFAI+LGSNL+SW+ARKQ TVSRSSTESEYKAIA+  AE+
Sbjct: 1299 VSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEI 1358

Query: 44   IWLKSLLRELGLDS 3
            +W+++LL EL + S
Sbjct: 1359 MWVQTLLAELEIKS 1372


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  493 bits (1268), Expect = e-137
 Identities = 251/434 (57%), Positives = 306/434 (70%), Gaps = 2/434 (0%)
 Frame = -1

Query: 1298 ANKSLEWRQAMAEELSALHRNGTWTLVPPVSNANIVACKWVYRLKTDEHGKITRYKARLV 1119
            A K   W+ AM  E  AL +N TW LVPP    NI+ CKWVY++K    G + RYKARLV
Sbjct: 944  ALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLV 1003

Query: 1118 AKGFNQQHGVDYHETFSPVIKPATIRTVLSLAVSNKWSIRQLDIQTAFLHGDLEETVYMH 939
            AKGF Q++G+DY +TFSPV+K ATIR +LSLAVS  WS+RQLD+Q AFLHG LEE VYM 
Sbjct: 1004 AKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYML 1063

Query: 938  QPPGFIDQTKPDHICLLHKSLYGLKQAPRAWFTKLSTALHQLGFYGSKTDPSLFILNSSG 759
            QPPGF D TKP H+C L K+LYGLKQAPRAWF++LS  L  LGF GSK D SLF LN   
Sbjct: 1064 QPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGD 1123

Query: 758  SLVYLLVYVDDIIITGNNSTAVASIIQKLDSLFALKDMGQLHYFLGVEVVHKGSDLVLSQ 579
              +++LVYVDDII+  ++  A A+++Q L   FALKD+G+LHYFLG+EV    + +VL+Q
Sbjct: 1124 ITMFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQ 1183

Query: 578  RKYVREILHRAGLADCKSISTPMSTSH--VXXXXXXXXXXXXSHYRQTVGALQYATLSRP 405
             KY  ++L + G+ DCK  +TP+S S                SHYR  VGALQY TL+RP
Sbjct: 1184 DKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRP 1243

Query: 404  DIAFAVNKVCQFMHAPTENHWAGVKRILRYLKGTIDLGLWIRHNTGYQLQAFSDSNWHSN 225
            DIAF+VNKVCQF+HAPT  HW  VKRILRYLK    LGL I H +G  L           
Sbjct: 1244 DIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEI-HKSGSTL----------- 1291

Query: 224  LQAFSDSDWAGCPVDRRSTGGFAIYLGSNLISWSARKQKTVSRSSTESEYKAIADTVAEL 45
            +  FSD+DWAGC  DRRSTGGFAI+LGSNL+SW+ARKQ TVSRSS ESEYKAIA+  AE+
Sbjct: 1292 VSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSIESEYKAIANATAEI 1351

Query: 44   IWLKSLLRELGLDS 3
            +W+++LL EL + S
Sbjct: 1352 MWVQTLLAELEIKS 1365


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  487 bits (1253), Expect = e-135
 Identities = 238/428 (55%), Positives = 306/428 (71%), Gaps = 2/428 (0%)
 Frame = -1

Query: 1280 WRQAMAEELSALHRNGTWTLVPPVSNANIVACKWVYRLKTDEHGKITRYKARLVAKGFNQ 1101
            WR AM  E +AL +N TW LVP     NI+ CKWVY++K    G + RYKARLVAKGF Q
Sbjct: 949  WRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQ 1008

Query: 1100 QHGVDYHETFSPVIKPATIRTVLSLAVSNKWSIRQLDIQTAFLHGDLEETVYMHQPPGFI 921
            ++G+DY +TFSPV+K ATIR +LS+AVS  WS+RQLD+Q AFLHG LEE VYM QPPGF 
Sbjct: 1009 RYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFE 1068

Query: 920  DQTKPDHICLLHKSLYGLKQAPRAWFTKLSTALHQLGFYGSKTDPSLFILNSSGSLVYLL 741
              +KPD++C L K+LYGLKQAPRAW+++LS  L +LGF  SK D SLF LN  G L+++L
Sbjct: 1069 SSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVL 1128

Query: 740  VYVDDIIITGNNSTAVASIIQKLDSLFALKDMGQLHYFLGVEVVHKGSDLVLSQRKYVRE 561
            VYVDDII+  +   A  ++++ L+  FALKD+G LHYFLG+EV    + ++L+Q KY  +
Sbjct: 1129 VYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYAND 1188

Query: 560  ILHRAGLADCKSISTPMSTSH--VXXXXXXXXXXXXSHYRQTVGALQYATLSRPDIAFAV 387
            +L R  +++CK +STP+S S                  YR  VGALQY TL+RPDIA++V
Sbjct: 1189 LLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSV 1248

Query: 386  NKVCQFMHAPTENHWAGVKRILRYLKGTIDLGLWIRHNTGYQLQAFSDSNWHSNLQAFSD 207
            NKVCQF+HAPT +HW  VKRILRYL     LGL I H +   L           +  +SD
Sbjct: 1249 NKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHI-HKSASTL-----------VHGYSD 1296

Query: 206  SDWAGCPVDRRSTGGFAIYLGSNLISWSARKQKTVSRSSTESEYKAIADTVAELIWLKSL 27
            +DWAG   DR+STGGFA++LGSNL+SWSARKQ TVSRSSTE+EYKA+A+T AELIW+++L
Sbjct: 1297 ADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTL 1356

Query: 26   LRELGLDS 3
            L+ELG++S
Sbjct: 1357 LKELGIES 1364