BLASTX nr result

ID: Atractylodes22_contig00010546 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00010546
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              63   1e-14
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                62   3e-13
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    62   3e-13
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    55   6e-13
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    59   2e-12

>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 63.2 bits (152), Expect(2) = 1e-14
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
 Frame = -1

Query: 297 LISLVMEILNLVLVQEIASDRSFTYHKGCE*TKLTHLGFADDLMFCM-GNVPSLMVLKRV 121
           L  + M++L+ +L Q  AS + F YH  C+   LTHL FADDLM    G V S+  +  V
Sbjct: 193 LFVMSMDVLSKLLDQA-ASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEV 251

Query: 120 IDKFPRLSGLKVNIMKSTAYFCNVPRETKQEI 25
            D F + SGLK+++ KST Y   V  +   EI
Sbjct: 252 FDIFAKFSGLKISMEKSTIYLAGVTEDVYHEI 283



 Score = 41.2 bits (95), Expect(2) = 1e-14
 Identities = 21/41 (51%), Positives = 24/41 (58%)
 Frame = -2

Query: 416 VGWIMECVRTVSFSINVNGDSHGFFVXXXXXXXGDPLSPYL 294
           V WIM C+ T SFS+ VNG+  GFF        G  LSPYL
Sbjct: 153 VHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYL 193


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 61.6 bits (148), Expect(2) = 3e-13
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = -1

Query: 297 LISLVMEILNLVLVQEIASDRSFTYHKGCE*TKLTHLGFADDLMFCM-GNVPSLMVLKRV 121
           L  + M++L+ +L  + A  R F +H  C+   LTHL FADDLM    G   S+  +  V
Sbjct: 313 LFVICMDVLSKML-DKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEV 371

Query: 120 IDKFPRLSGLKVNIMKSTAYFCNVPRETKQEISA 19
            D+F + SGL++++ KST Y   V    KQEI+A
Sbjct: 372 FDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAA 405



 Score = 38.5 bits (88), Expect(2) = 3e-13
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = -2

Query: 416 VGWIMECVRTVSFSINVNGDSHGFFVXXXXXXXGDPLSPYL 294
           + WI  C+ T SFS+ VNGD  G+F        G  LSPYL
Sbjct: 273 IHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYL 313


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 62.4 bits (150), Expect(2) = 3e-13
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
 Frame = -1

Query: 297 LISLVMEILNLVLVQEIASDRSFTYHKGCE*TKLTHLGFADDLMFCM-GNVPSLMVLKRV 121
           L  + M++L+ +L  + A+ R F YH  C+   LTHL FADDLM    G + S+  + +V
Sbjct: 666 LFVICMDVLSKML-DKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKV 724

Query: 120 IDKFPRLSGLKVNIMKSTAYFCNVPRETKQEISATVKISS 1
            D+F + SGL++++ KST Y   +    + E++     SS
Sbjct: 725 FDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSS 764



 Score = 37.4 bits (85), Expect(2) = 3e-13
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -2

Query: 416 VGWIMECVRTVSFSINVNGDSHGFFVXXXXXXXGDPLSPYL 294
           + WI  C+ T SFS+ VNG+  G+F        G  LSPYL
Sbjct: 626 IHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYL 666


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 55.1 bits (131), Expect(2) = 6e-13
 Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
 Frame = -1

Query: 309 PLS-LLISLVMEILNLVLVQEIASDRSFTYHKGCE*TKLTHLGFADDLM-FCMGNVPSLM 136
           PLS  L  + MEIL+ +L  +  SD S  YH      +++ L FADDLM F  G   SL 
Sbjct: 654 PLSPSLFVIAMEILSRLLENKF-SDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLR 712

Query: 135 VLKRVIDKFPRLSGLKVNIMKSTAYFCNVPRETKQEISA 19
            +K V++ F  LSGL++N  KS  Y   +    K++  A
Sbjct: 713 GIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLA 751



 Score = 43.9 bits (102), Expect(2) = 6e-13
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -2

Query: 422 RMVGWIMECVRTVSFSINVNGDSHGFFVXXXXXXXGDPLSPYL 294
           R V WI +C+ + SFSINV+G   G+F        GDPLSP L
Sbjct: 617 RFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSL 659


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 59.3 bits (142), Expect(2) = 2e-12
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -1

Query: 309 PLS-LLISLVMEILNLVLVQEIASDRSFTYHKGCE*TKLTHLGFADD-LMFCMGNVPSLM 136
           PLS  L +L ME L+  +   +  D  F +H  CE  KLTHL FADD LMF   +  S+ 
Sbjct: 649 PLSPFLFALSMEYLSRCM-GNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSIS 707

Query: 135 VLKRVIDKFPRLSGLKVNIMKSTAYFCNVPRETKQEISATVKI 7
            +    + F + SGL+ +I KS  YF  V  E  ++++  +++
Sbjct: 708 KIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQM 750



 Score = 37.7 bits (86), Expect(2) = 2e-12
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -2

Query: 416 VGWIMECVRTVSFSINVNGDSHGFFVXXXXXXXGDPLSPYL 294
           + WIM CV+TVS+SI +NG     F        GDPLSP+L
Sbjct: 614 IRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFL 654


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