BLASTX nr result

ID: Atractylodes22_contig00009096 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00009096
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...    62   5e-08
emb|CBI22720.3| unnamed protein product [Vitis vinifera]               62   5e-08
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]    59   5e-07
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...    56   4e-06

>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
           vinifera]
          Length = 511

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
 Frame = +3

Query: 21  NVLHENFNKLAQARYIERCPAHEPFLAPPEEGDAPAKRRAARS-KMAD--GTLEXXXXXX 191
           + L E+F KL +A ++ERCPA EPFLAPP E + PA++R A+S K+ +   T+E      
Sbjct: 141 DALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAA 200

Query: 192 XXPMESIRFLV 224
             PM++ RF V
Sbjct: 201 AAPMDAKRFSV 211


>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
 Frame = +3

Query: 21  NVLHENFNKLAQARYIERCPAHEPFLAPPEEGDAPAKRRAARS-KMAD--GTLEXXXXXX 191
           + L E+F KL +A ++ERCPA EPFLAPP E + PA++R A+S K+ +   T+E      
Sbjct: 148 DALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAA 207

Query: 192 XXPMESIRFLV 224
             PM++ RF V
Sbjct: 208 AAPMDAKRFSV 218


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
           predicted protein [Populus trichocarpa]
          Length = 519

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/71 (49%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +3

Query: 27  LHENFNKLAQARYIERCPAHEPFLA-PPEEGDAPAKRRAARSKMA---DGTLEXXXXXXX 194
           L EN +KL  ARY+ERCP  EPFLA P EE  AP +RR A+S  A     TLE       
Sbjct: 146 LQENMHKLVMARYVERCPISEPFLALPSEEEAAPVRRRGAKSAKAFLEPETLEQRVLVAA 205

Query: 195 XPMESIRFLVE 227
            P E +RF  E
Sbjct: 206 VPPEGMRFSFE 216


>emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
          Length = 721

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/50 (52%), Positives = 35/50 (70%)
 Frame = +3

Query: 21  NVLHENFNKLAQARYIERCPAHEPFLAPPEEGDAPAKRRAARSKMADGTL 170
           + L E+F KL +A ++ERCPA EPFLAPP E + PA++R A+S    G L
Sbjct: 146 DALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKQWGLL 195


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
           [Ricinus communis] gi|223549895|gb|EEF51382.1|
           DNA-directed RNA polymerase III 62 kDa polypeptide,
           putative [Ricinus communis]
          Length = 485

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +3

Query: 33  ENFNKLAQARYIERCPAHEPFLAPPEEGDAPAKRRAARSK---MADGTLEXXXXXXXXPM 203
           EN  KL   RYIE CPA EP LAPP E +  AK+R+A+S    +   TLE        PM
Sbjct: 143 ENLCKLVNGRYIEHCPASEPVLAPPTEEEDRAKKRSAKSAKIVIESETLEQRVLAVAVPM 202

Query: 204 ESIRFLVE 227
           ++ RF V+
Sbjct: 203 DAKRFSVD 210


Top