BLASTX nr result
ID: Atractylodes22_contig00007281
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00007281
(883 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 200 5e-63
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,... 191 2e-60
ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab... 187 9e-60
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] 189 2e-59
ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana] gi|122... 189 6e-59
>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 200 bits (508), Expect(2) = 5e-63
Identities = 99/161 (61%), Positives = 125/161 (77%)
Frame = -2
Query: 582 ISGRSKGFGFVTMSSIKEVEAATRQFNGYELEGRQLRVNSGPPPSRGESPFXXXXXXXXX 403
I+GRS+GFGFVTMS+++EVEAA +QFNGYELEGRQLRVNSGPPP+R E+
Sbjct: 126 ITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFR 185
Query: 402 XXXXXXXXXXXXXXSDNTNKVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSK 223
++TN++YVGNL+W VD+LALETLF EQG V EARVIYDR++GRS+
Sbjct: 186 GENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSR 245
Query: 222 GFGFVTYSSADEVNSAIQSLDGLNVDGRNIRVVVAEARESR 100
GFGFVTY+SA+EVN AI+SLDG++++GR+IRV +AEAR R
Sbjct: 246 GFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEARPRR 286
Score = 68.2 bits (165), Expect(2) = 5e-63
Identities = 36/65 (55%), Positives = 46/65 (70%)
Frame = -3
Query: 851 SSRFVRNLAVAXXXXXXXXXXXXXXXEQQPNYSPDLKVYVGNLPWNVDSAALADLFQRAG 672
SSRFVRN+AV+ +P++SPDLK++VGNLP+NVDSA LA LF++AG
Sbjct: 58 SSRFVRNVAVSSDYEQDEDVLSDEG---EPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAG 114
Query: 671 NVEMV 657
NVEMV
Sbjct: 115 NVEMV 119
Score = 77.8 bits (190), Expect = 3e-12
Identities = 36/73 (49%), Positives = 52/73 (71%)
Frame = -2
Query: 345 KVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSKGFGFVTYSSADEVNSAIQS 166
K++VGNL ++VD+ L LF + GNV VIYD+ +GRS+GFGFVT S+ +EV +A Q
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQ 150
Query: 165 LDGLNVDGRNIRV 127
+G ++GR +RV
Sbjct: 151 FNGYELEGRQLRV 163
>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 191 bits (484), Expect(2) = 2e-60
Identities = 99/164 (60%), Positives = 122/164 (74%)
Frame = -2
Query: 582 ISGRSKGFGFVTMSSIKEVEAATRQFNGYELEGRQLRVNSGPPPSRGESPFXXXXXXXXX 403
++GRS+GFGFVTMSS +EVEAA +QFNGYEL+GR LRVNSGPPP + E+
Sbjct: 123 LTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS---------- 172
Query: 402 XXXXXXXXXXXXXXSDNTNKVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSK 223
D++N+VYVGNLAW VD ALETLF EQG V++A+V+YDRDSGRS+
Sbjct: 173 ---SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 229
Query: 222 GFGFVTYSSADEVNSAIQSLDGLNVDGRNIRVVVAEARESRPQF 91
GFGFVTYSSA+EVN+AI+SLDG++++GR IRV AEAR R QF
Sbjct: 230 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
Score = 68.6 bits (166), Expect(2) = 2e-60
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = -3
Query: 851 SSRFVRNLAVAXXXXXXXXXXXXXXXEQQPNYSPDLKVYVGNLPWNVDSAALADLFQRAG 672
SSRFVR + ++ E++ N+SPDLK++VGNLP++ DSAALA+LF+RAG
Sbjct: 52 SSRFVRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAG 111
Query: 671 NVEMV 657
NVEMV
Sbjct: 112 NVEMV 116
Score = 80.9 bits (198), Expect = 4e-13
Identities = 41/82 (50%), Positives = 53/82 (64%)
Frame = -2
Query: 345 KVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSKGFGFVTYSSADEVNSAIQS 166
K++VGNL +S D+ AL LF GNV VIYD+ +GRS+GFGFVT SS +EV +A Q
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 165 LDGLNVDGRNIRVVVAEARESR 100
+G +DGR +RV E R
Sbjct: 148 FNGYELDGRALRVNSGPPPEKR 169
>ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein
ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 187 bits (476), Expect(2) = 9e-60
Identities = 97/164 (59%), Positives = 116/164 (70%)
Frame = -2
Query: 582 ISGRSKGFGFVTMSSIKEVEAATRQFNGYELEGRQLRVNSGPPPSRGESPFXXXXXXXXX 403
++GRS+GFGFVTMSS+ EVEAA QFNGYEL+GR LRVN+GPPP + E F
Sbjct: 127 VTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFG 186
Query: 402 XXXXXXXXXXXXXXSDNTNKVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSK 223
N+VYVGNL+W VD++ALE+LF EQG V+EARVIYDRDSGRSK
Sbjct: 187 SSGSGYGGGGGSGAGSG-NRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSK 245
Query: 222 GFGFVTYSSADEVNSAIQSLDGLNVDGRNIRVVVAEARESRPQF 91
GFGFVTY+S+ EV +AI SL+G ++DGR IRV AEAR R QF
Sbjct: 246 GFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
Score = 69.7 bits (169), Expect(2) = 9e-60
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = -3
Query: 854 PSSRFVRNLAVAXXXXXXXXXXXXXXXEQQPNYSPDLKVYVGNLPWNVDSAALADLFQRA 675
P+SRFVRN+A+ QQ ++S DLK++VGNLP+NVDSA LA LF+ A
Sbjct: 55 PASRFVRNVAITSEFEVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 674 GNVEMV 657
GNVEMV
Sbjct: 115 GNVEMV 120
Score = 76.3 bits (186), Expect = 9e-12
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = -2
Query: 345 KVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSKGFGFVTYSSADEVNSAIQS 166
K++VGNL ++VD+ L LF GNV VIYD+ +GRS+GFGFVT SS EV +A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQ 151
Query: 165 LDGLNVDGRNIRV 127
+G +DGR +RV
Sbjct: 152 FNGYELDGRPLRV 164
>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 189 bits (480), Expect(2) = 2e-59
Identities = 98/164 (59%), Positives = 117/164 (71%)
Frame = -2
Query: 582 ISGRSKGFGFVTMSSIKEVEAATRQFNGYELEGRQLRVNSGPPPSRGESPFXXXXXXXXX 403
I+GRS+GFGFVTMSS+ EVEAA +QFNGYEL+GR LRVN+GPPP + E F
Sbjct: 127 ITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFG 186
Query: 402 XXXXXXXXXXXXXXSDNTNKVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSK 223
N+VYVGNL+W VD++ALE+LF EQG V+EARVIYDRDSGRSK
Sbjct: 187 SSGSGYGGGGGSGAGSG-NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 222 GFGFVTYSSADEVNSAIQSLDGLNVDGRNIRVVVAEARESRPQF 91
GFGFVTY S+ EV +AI+SLDG ++DGR IRV AEAR R Q+
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 67.0 bits (162), Expect(2) = 2e-59
Identities = 33/66 (50%), Positives = 44/66 (66%)
Frame = -3
Query: 854 PSSRFVRNLAVAXXXXXXXXXXXXXXXEQQPNYSPDLKVYVGNLPWNVDSAALADLFQRA 675
P+SRFVRN+A+ ++ ++S DLK++VGNLP+NVDSA LA LF+ A
Sbjct: 55 PASRFVRNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 674 GNVEMV 657
GNVEMV
Sbjct: 115 GNVEMV 120
Score = 78.2 bits (191), Expect = 2e-12
Identities = 38/73 (52%), Positives = 50/73 (68%)
Frame = -2
Query: 345 KVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSKGFGFVTYSSADEVNSAIQS 166
K++VGNL ++VD+ L LF GNV VIYD+ +GRS+GFGFVT SS EV +A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 165 LDGLNVDGRNIRV 127
+G +DGR +RV
Sbjct: 152 FNGYELDGRPLRV 164
>ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName:
Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative
RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|15081717|gb|AAK82513.1|
At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|20197716|gb|AAM15222.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein
[Arabidopsis thaliana]
Length = 289
Score = 189 bits (480), Expect(2) = 6e-59
Identities = 98/164 (59%), Positives = 117/164 (71%)
Frame = -2
Query: 582 ISGRSKGFGFVTMSSIKEVEAATRQFNGYELEGRQLRVNSGPPPSRGESPFXXXXXXXXX 403
I+GRS+GFGFVTMSS+ EVEAA +QFNGYEL+GR LRVN+GPPP + E F
Sbjct: 127 ITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFG 186
Query: 402 XXXXXXXXXXXXXXSDNTNKVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSK 223
N+VYVGNL+W VD++ALE+LF EQG V+EARVIYDRDSGRSK
Sbjct: 187 SSGSGYGGGGGSGAGSG-NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 222 GFGFVTYSSADEVNSAIQSLDGLNVDGRNIRVVVAEARESRPQF 91
GFGFVTY S+ EV +AI+SLDG ++DGR IRV AEAR R Q+
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 65.5 bits (158), Expect(2) = 6e-59
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = -3
Query: 854 PSSRFVRNLAVAXXXXXXXXXXXXXXXEQQPNYSPDLKVYVGNLPWNVDSAALADLFQRA 675
P+SRF RN+A+ ++ ++S DLK++VGNLP+NVDSA LA LF+ A
Sbjct: 55 PASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 674 GNVEMV 657
GNVEMV
Sbjct: 115 GNVEMV 120
Score = 78.2 bits (191), Expect = 2e-12
Identities = 38/73 (52%), Positives = 50/73 (68%)
Frame = -2
Query: 345 KVYVGNLAWSVDNLALETLFREQGNVMEARVIYDRDSGRSKGFGFVTYSSADEVNSAIQS 166
K++VGNL ++VD+ L LF GNV VIYD+ +GRS+GFGFVT SS EV +A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 165 LDGLNVDGRNIRV 127
+G +DGR +RV
Sbjct: 152 FNGYELDGRPLRV 164