BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00006332
         (3645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   847   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   837   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     800   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     792   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   783   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  847 bits (2189), Expect = 0.0
 Identities = 469/1096 (42%), Positives = 650/1096 (59%), Gaps = 19/1096 (1%)
 Frame = +2

Query: 413  SGSNLQIEKWNGKGDFGKWQWKMKAVLRRNRVHRVVYDLEQLPPNISDIEKQEMEEWAFT 592
            S  N++I+K+ G+  F  WQ KM+A+L++         L +    +   E   +EE A +
Sbjct: 2    SALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWA---PLSKDKNAVVTPEMAILEEKAHS 58

Query: 593  TLQLAIDERVISEVENETTARGIWXXXXXXXXXXXXPNRLILMKTFFTYKMKEGTSIDSH 772
            T+ L + + VI+EV +E TA G+W             N+L+L +  F  +M EGT +  H
Sbjct: 59   TIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREH 118

Query: 773  LANFDDLLMKMKAMGLKFEDEQLAMVLLCSLPEKYVAFSNSLIYGRDTLTMEDVKTGLMS 952
            L   + LL++++ + +K EDE  A++LL SLP  +  F  S I G+DT+++E+V++ L S
Sbjct: 119  LEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHS 178

Query: 953  EVMIGDLKGLGEDKD-----TSSSHGLNAXXXXXXXXXXXXXXXXXXXXXXXXXXARSKG 1117
              +     G   D       TSS  G                               +K 
Sbjct: 179  RELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKG-----------------AKP 221

Query: 1118 RGNCHYCHASDHWVRDCPKLKSKEQNEGSTSSXXXXXXXXXXXXXXXXXXSPHK---WIL 1288
               C+YC    HW  DCPK K + + +  +++                    H    W+L
Sbjct: 222  DDVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVL 281

Query: 1289 DSGASFHMTPNKECFDTLDEKEGSTIMMANNSACKCMGIGTVRVKMFDGRTRTITNVRYV 1468
            DSGAS+H+ P +E F T ++ +G +I MAN+S CK +G G+++++  DG   T+  VR+V
Sbjct: 282  DSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHV 341

Query: 1469 PTMSKSLISLGQLANIGCKVSIVGDTMKVSRGNLVIAKGTRAQNNLYFLEGQTVEGDACV 1648
            P M+K+LISL  L + G   S     ++V +G+ +I KG   +  LYFL+G TV G A V
Sbjct: 342  PLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVM-RGTLYFLQGSTVTGSAHV 400

Query: 1649 GANISKKLDPTKLWHLRLGHTSEGNLHVLRKRKMIKGNDLGSLDFCKDCVLGKQTRVTFG 1828
             ++   + D TKLWH+RLGH  E  + +L K  ++ G+ + SL+FC+ CV GK  R  F 
Sbjct: 401  ASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFP 460

Query: 1829 VAKHTTAGILDYVHSDVWGPASTQSHSGGQFFVSFIDDFSRKVWVFVMRQKSDVFDKFKQ 2008
             A H T G LDY+HSD WGP   +S  G +FFVS IDD+SR  WV++M+ KS+ F KFK+
Sbjct: 461  KAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKE 520

Query: 2009 WLALVENQTGRRLKVLRSDNDGEYKSGEFLKFCKDKGIQRHFTTPHDPQSNGVAERMNRT 2188
            W  L+ENQTG+++K LR+DN  E+   EF +FCKD+GI RH T  + PQ NGVAERMN+T
Sbjct: 521  WKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQT 580

Query: 2189 LLEKARCMRISAGFSKVFWAETLYTAAHLINRLPCSSINGKIPEEVWRGNKPVNIGYLRI 2368
            LLE+ARCM  +AG  + FWAE + TA +LINR P + I  K P E+W G K  +   L+ 
Sbjct: 581  LLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSG-KAADYSNLKA 639

Query: 2369 FGCPVYVHNIAKDKLDPRAIQGKLLGFTNGIKGYRIWNPETRKVIHSRHVTFDEESMMKP 2548
            FGC  Y H +++ KL+PRA +G  +G+ +G+KG+RIW+P  ++VI SR+V FDE  +++ 
Sbjct: 640  FGCTAYYH-VSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRT 698

Query: 2549 MDTTVEVDSFTPSSNKVTFGDQENPPEPSSTCPQDNSPMQEDVSPQGGTRTPIQEESPNQ 2728
            +              +V F   +N  +          P +ED  PQ  T  P    S   
Sbjct: 699  IVKPTTTSETGSLDKQVEFQVIQNESDL-------KEPEEEDQEPQTETDIPESMPSDIH 751

Query: 2729 GGTIPKVPVRASNRTIKPPERFGEWSYANMTFSDQLDYALHVVHD----EPSDYREVLES 2896
                   P R     ++PP R+G        F D + YAL V  +    EPS Y+E + S
Sbjct: 752  QSIAQDRPRRVG---VRPPTRYG--------FEDMVGYALQVAEEVDTSEPSTYKEAILS 800

Query: 2897 KDSTKWVDAMKEEMDSLSKNQTWDLVRLPRDCRAIGCKWVFKVK------DNGRFKARLV 3058
             DS KW  AM +EM+SL KNQTWDLV  P   + I CKWVFK K      +  ++KAR+V
Sbjct: 801  SDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVV 860

Query: 3059 AKGYTQRKGIEYDDIFAPVVRHTSIRVILSMVACQDMELEQLDVKTAFLHGDLEETIYMK 3238
            A+G+ QR+G++Y++IF+PVVRHTSIRV+L++VA Q++ELEQLDVKTAFLHG+LEE IYM 
Sbjct: 861  ARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT 920

Query: 3239 QPKGFVEDGKADLVCKLKKSLYGLKQSPRQWYKRFDLFMLGIGFKRSVKDPCVYF-RCTH 3415
            QP GF   GK + VCKLKKSLYGLKQSPRQWYKRFD +M+ +G+ RS  D CVY+ R   
Sbjct: 921  QPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLND 980

Query: 3416 DTWIYLLLYVDDMLIACKDAMEVAKLKQSLKTEFDMKDLGHASKILGMEIIRDREAKTLK 3595
            D++IYL+LYVDDMLIA K   ++ KLK  L  EF+MKDLG A KILGMEIIRDRE + L 
Sbjct: 981  DSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLF 1040

Query: 3596 LTQREYIQKVLGRFNM 3643
            L+QR YIQKVL RF M
Sbjct: 1041 LSQRSYIQKVLARFGM 1056


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  837 bits (2161), Expect = 0.0
 Identities = 461/1093 (42%), Positives = 654/1093 (59%), Gaps = 31/1093 (2%)
 Frame = +2

Query: 458  FGKWQWKMKAVLRRNRVHRVVYDLEQLPPNISDIEKQEMEEWAFTTLQLAIDERVISEVE 637
            F  WQ KM+AVL +  +   +   ++   + S+ EK+  +  A + + L +   ++ EV 
Sbjct: 224  FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKR-DRKAMSYIHLHLSNNILQEVL 282

Query: 638  NETTARGIWXXXXXXXXXXXXPNRLILMKTFFTYKMKEGTSIDSHLANFDDLLMKMKAMG 817
             E  A G+W             +++ L +T F +K+++  S+  HL+ F +++  +++M 
Sbjct: 283  KEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESME 342

Query: 818  LKFEDEQLAMVLLCSLPEKYVAFSNSLIYGRDTLTMEDVKTGL-MSEVMIGDLKGLGEDK 994
            +K+++E L ++LLCSLP  Y  F ++++Y RDTLT+++V   L + E M    K +  + 
Sbjct: 343  VKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKM---KKMVPSEG 399

Query: 995  DTSSSHGLNAXXXXXXXXXXXXXXXXXXXXXXXXXXARSKGRG---NCHYCHASDHWVRD 1165
              S + GL                             RSK RG   +C YC    H + +
Sbjct: 400  SNSQAEGL----IVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFE 455

Query: 1166 CPKL------------KSKEQNEGSTSSXXXXXXXXXXXXXXXXXX-SPHKWILDSGASF 1306
            C KL            K K++ EG  +                    +  +WIL++   +
Sbjct: 456  CWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIY 515

Query: 1307 HMTPNKECFDTLDEKEGSTIMMANNSACKCMGIGTVRVKMFDGRTRTITNVRYVPTMSKS 1486
            HM PN++ F T +  +  T++M +++ C+  GIGTV++KMFDG  RT+++VR++P + +S
Sbjct: 516  HMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRS 575

Query: 1487 LISLGQLANIGCKVSIVGDTMKVSRGNLVIAKGTRAQNNLYFLEGQTVEGDACVGANISK 1666
            LISL  L   G K S     +KV++G+LV+ K      NLY L G T+ G+    ++   
Sbjct: 576  LISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLS 635

Query: 1667 KLDPTKLWHLRLGHTSEGNLHVLRKRKMIKGNDLGSLDFCKDCVLGKQTRVTFGVAKHTT 1846
              D T LWH+RLGH +E  L  L KR ++ G  +G L FC+ C+ GK  RV F  + HTT
Sbjct: 636  NSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTT 695

Query: 1847 AGILDYVHSDVWGPASTQSHSGGQFFVSFIDDFSRKVWVFVMRQKSDVFDKFKQWLALVE 2026
             GILDYVHSD+WGPA   S  G ++ ++ +DD+SRKVW + ++ K   FD FK+W  +VE
Sbjct: 696  EGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVE 755

Query: 2027 NQTGRRLKVLRSDNDGEYKSGEFLKFCKDKGIQRHFTTPHDPQSNGVAERMNRTLLEKAR 2206
             QT R++K+LR+DN  E+ S  F  +CK +GI RH+T PH PQ NGVAERMNRT++ KAR
Sbjct: 756  RQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKAR 815

Query: 2207 CMRISAGFSKVFWAETLYTAAHLINRLPCSSINGKIPEEVWRGNKPVNIGYLRIFGCPVY 2386
            C+  +AG  K FWAE + TA +LINR P  +I+ K P EVW G+ P N   LR+FGC  Y
Sbjct: 816  CLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYSDLRVFGCTAY 874

Query: 2387 VHNIAKDKLDPRAIQGKLLGFTNGIKGYRIWNPETRKVIHSRHVTFDEESMM--KPMDTT 2560
             H +   KL+PRAI+   LG+ +G+KGY++W PET+KV+ SR+V F E  M+  KP  T 
Sbjct: 875  AH-VDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKP-STN 932

Query: 2561 VEVDSFTPSSNKVT-FGDQENPPEPSSTCPQDNSPMQEDVSPQGGTRTPIQEESPNQGGT 2737
            V V+S   +S +V       + PE        + P+ ED      + + I ++SP +   
Sbjct: 933  VPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIED------SNSSIVQQSPKR--- 983

Query: 2738 IPKVPVRASNRTIKPPERFGEWSYANMTFSDQLDYALHVVHD-----EPSDYREVLESKD 2902
               +      R IKPP+R+ E   AN+     + YAL V  +     EPS Y E + S D
Sbjct: 984  --SIAKDRPKRNIKPPQRYIE--EANI-----VAYALSVAEEIEGNAEPSTYSEAIVSDD 1034

Query: 2903 STKWVDAMKEEMDSLSKNQTWDLVRLPRDCRAIGCKWVFKVK------DNGRFKARLVAK 3064
              +W+ AM +EM+SL KN TW+LV+LP++ + I CKW+FK K      D  R+KARL+AK
Sbjct: 1035 CNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAK 1094

Query: 3065 GYTQRKGIEYDDIFAPVVRHTSIRVILSMVACQDMELEQLDVKTAFLHGDLEETIYMKQP 3244
            GY+Q  GI+++D+F+PVV+H+SIR +LS+VA  D ELEQ+DVKTAFLHG+LEE IYM+QP
Sbjct: 1095 GYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQP 1154

Query: 3245 KGFVEDGKADLVCKLKKSLYGLKQSPRQWYKRFDLFMLGIGFKRSVKDPCVYFRCTHDTW 3424
            KGFV  GK +LVC+LKKSLYGLKQSPRQWYKRFD FML   F+RS  D CVY +    + 
Sbjct: 1155 KGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSA 1214

Query: 3425 IYLLLYVDDMLIACKDAMEVAKLKQSLKTEFDMKDLGHASKILGMEIIRDREAKTLKLTQ 3604
            IYLLLYVDDMLIA KD  E+AKLK  L +EF+MKDLG A KILGMEI R R +  L L+Q
Sbjct: 1215 IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQ 1274

Query: 3605 REYIQKVLGRFNM 3643
            + YI+KVL RFNM
Sbjct: 1275 KGYIEKVLRRFNM 1287


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  800 bits (2065), Expect = 0.0
 Identities = 446/1085 (41%), Positives = 638/1085 (58%), Gaps = 30/1085 (2%)
 Frame = +2

Query: 479  MKAVLRRNRVHRVVYDLEQLPPNISDIEKQEMEEWAFTTLQLAIDERVISEVENETTARG 658
            MK VL +    + +      P N+SD+   +  +   + ++L + + V+  +    TA+ 
Sbjct: 1    MKNVLIQQETDKAI---RTKPTNMSDVLWTKKNKKTKSCIELHLADNVLLHIGETMTAKE 57

Query: 659  IWXXXXXXXXXXXXPNRLILMKTFFTYKMKEGTSIDSHLANFDDLLMKMKAMGLKFEDEQ 838
             W             N+L+L +  F  KM+EG  ++ H+  F + +  ++ +G K +DE 
Sbjct: 58   AWENLESVYKGKSIGNKLLLKEQLFGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDED 117

Query: 839  LAMVLLCSLPEKYVAFSNSLIYGRDTLTMEDVKTGLMSEVMIGDLKGLGEDKDTSSSHGL 1018
             A++LL SLP  +  F  ++I+ ++ +T+  V     S +       L  ++D+S + GL
Sbjct: 118  TAVMLLHSLPPLFKHFKTTMIF-KELITLSKVCENPKSYIR------LEREEDSSQARGL 170

Query: 1019 NAXXXXXXXXXXXXXXXXXXXXXXXXXXARSKGRG-----NCHYCHASDHWVRDCPKLKS 1183
                                        ++SKG+G      C    + DHW R+C + K 
Sbjct: 171  ------YVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDGCFIYGSPDHWKRNCKQWKE 224

Query: 1184 KE-QNEGSTSSXXXXXXXXXXXXXXXXXXS-----PHKWILDSGASFHMTPNKECFDTLD 1345
            K+ Q  G +S                   S     P  W LD+  +FH   +++ FDT  
Sbjct: 225  KKAQMSGESSQLANVVIGYNDEDGELLAISTSSGAPRHWTLDTACTFHTCAHRDWFDTYK 284

Query: 1346 EKEGSTIMMANNSACKCMGIGTVRVKMFDGRTRTITNVRYVPTMSKSLISLGQLANIGCK 1525
            E    +++M N+S  + MGIG V+++M DG  R + NVR+ P ++++LISL  +  +G  
Sbjct: 285  EGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFW 344

Query: 1526 VSIVGDTMKVSRGNLVIAKGTRAQNNLYFLEGQTVEGDACVGANISKKLDPTKLWHLRLG 1705
                   +KV +G +V  KG    +N+Y L G TVEG    GA +  + D T+LW  RLG
Sbjct: 345  HKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEG----GAGVCTEEDKTELWRRRLG 400

Query: 1706 HTSEGNLHVLRKRKMIKGNDLGSLDFCKDCVLGKQTRVTFGV--AKHTTAGILDYVHSDV 1879
            H S+  L  L K++ + G    +L+FC+ C LGKQTRV+F +  +++ + G+LDY+H+DV
Sbjct: 401  HMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDV 460

Query: 1880 WGPASTQSHSGGQFFVSFIDDFSRKVWVFVMRQKSDVFDKFKQWLALVENQTGRRLKVLR 2059
            WGP++T S  G ++FVSFIDDFSRKVW+F M+ K++VF KFK+W A V NQTGR++K LR
Sbjct: 461  WGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLR 520

Query: 2060 SDNDGEYKSGEFLKFCKDKGIQRHFTTPHDPQSNGVAERMNRTLLEKARCMRISAGFSKV 2239
            SDN GEY+  +FL+ CKD+GI RHFT    PQ NGVAERMNRTL+EK R MR  AG  + 
Sbjct: 521  SDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEE 580

Query: 2240 FWAETLYTAAHLINRLPCSSINGKIPEEVWRGNKPVNIGYLRIFGCPVYVHNIAKD---K 2410
            FWAE    A +LINR P  +IN K  EEVW G KPV+   LR+FGC  Y H I KD   K
Sbjct: 581  FWAEAANHACYLINRSPSRAINFKCAEEVWSG-KPVDYSNLRVFGCSAYAH-IPKDERTK 638

Query: 2411 LDPRAIQGKLLGFTNGIKGYRIWNPETRKVIHSRHVTFDEE-----SMMKP--MDTTVEV 2569
            L+P++++   +GF  G+KGY++W+    K + SR V FDE      S+ KP   D+  +V
Sbjct: 639  LEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQV 698

Query: 2570 DSFTPSSNKVTFGDQENPPEPSSTCPQDNSPMQEDVSPQGGTRTPIQEESPNQGGTIPKV 2749
            +     +++V   + E+  +P+          Q + SPQ G  +PI +   +   +I   
Sbjct: 699  EQNEQGNDEVAIEEPEHQQQPTVMA-------QVEQSPQRGQNSPIPQAPESFKRSI--- 748

Query: 2750 PVRASNRTIKPPERFGEWSYANMTFSDQLDYALHVVHDEPSDYREVLESKDSTKWVDAMK 2929
             +    R  KP +RFG          + +  AL +   +P+ Y + +ES +S  W+ AM 
Sbjct: 749  ALDKPKRNRKPIQRFG------FEPEEDVSRALSISQGDPTTYEDAIESVESAGWIGAMT 802

Query: 2930 EEMDSLSKNQTWDLVRLPRDCRAIGCKWVFKVK------DNGRFKARLVAKGYTQRKGIE 3091
            EEM+SL KN  W+LV  P++ + +GCKWVF+ K      D   +KARLVAKGY+Q++G++
Sbjct: 803  EEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVD 862

Query: 3092 YDDIFAPVVRHTSIRVILSMVACQDMELEQLDVKTAFLHGDLEETIYMKQPKGFVEDGKA 3271
            YD+IF+PVV+HTSIR++LS+ A  DME+EQ+DVKTAFLHGDLEE IYM QP+GFVE GK 
Sbjct: 863  YDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKE 922

Query: 3272 DLVCKLKKSLYGLKQSPRQWYKRFDLFMLGIGFKRSVKDPCVYFRCTHD-TWIYLLLYVD 3448
            +LVC+LKKSLYGLKQSPRQWYK FD +ML IG+ R   D CVY+    D   I LLLYVD
Sbjct: 923  NLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVD 982

Query: 3449 DMLIACKDAMEVAKLKQSLKTEFDMKDLGHASKILGMEIIRDREAKTLKLTQREYIQKVL 3628
            DMLIAC+D +++ KLK+ L  EFDMKDLG A KILG+EI RDR A  + L+Q +YI K+L
Sbjct: 983  DMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKIL 1042

Query: 3629 GRFNM 3643
             RFNM
Sbjct: 1043 ERFNM 1047


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  792 bits (2045), Expect = 0.0
 Identities = 437/1079 (40%), Positives = 633/1079 (58%), Gaps = 17/1079 (1%)
 Frame = +2

Query: 458  FGKWQWKMKAVLRRNRVHRVVYDLEQLPPNISDIEKQEMEEWAFTTLQLAIDERVISEVE 637
            F  WQ KM+AVL +  +   +   ++   + S+ EK+  +  A + + L +   ++ EV 
Sbjct: 17   FSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKR-DRKAISYIHLHLSNNILQEVL 75

Query: 638  NETTARGIWXXXXXXXXXXXXPNRLILMKTFFTYKMKEGTSIDSHLANFDDLLMKMKAMG 817
             E TA G+W             +++ L +  F +K+++  S+  HL+ F +++  +++M 
Sbjct: 76   KEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAFKEIVADLESME 135

Query: 818  LKFEDEQLAMVLLCSLPEKYVAFSNSLIYGRDTLTMEDVKTGLMSEVMIGDLKGLGEDKD 997
            +K++++ L ++LLCSLP  Y  F  +++Y RDTLT+++V     ++  +   K +  +  
Sbjct: 136  VKYDEDDLGLILLCSLPSSYANFRGTILYSRDTLTLKEVYDAFHAKEKM--KKMVTSEGS 193

Query: 998  TSSSHGLNAXXXXXXXXXXXXXXXXXXXXXXXXXXARSKGRG---NCHYCHASDHWVRDC 1168
             S + GL                             R+K RG   +C YC    H + +C
Sbjct: 194  NSQAEGL----VVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKSCKYCKRDGHDISEC 249

Query: 1169 PKLKSKEQNEGSTSSXXXXXXXXXXXXXXXXXXSPHKWILDSGASFHMTPNKECFDTLDE 1348
             KL+ K++  G                           +  +G +   T +++ F T + 
Sbjct: 250  WKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCA--QTSDQDWFATYEA 307

Query: 1349 KEGSTIMMANNSACKCMGIGTVRVKMFDGRTRTITNVRYVPTMSKSLISLGQLANIGCKV 1528
             +G T++M +++ C+  GIGTV++KMFDG  RT+++V+++P + +SLISL  +       
Sbjct: 308  LQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLYGI------- 360

Query: 1529 SIVGDTMKVSRGNLVIAKGTRAQNNLYFLEGQTVEGDACVGANISKKLDPTKLWHLRLGH 1708
                  +KV++G+LV+ K      NLY L G T+ G+     +     D T LWH+RLGH
Sbjct: 361  ------LKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLGH 414

Query: 1709 TSEGNLHVLRKRKMIKGNDLGSLDFCKDCVLGKQTRVTFGVAKHTTAGILDYVHSDVWGP 1888
             SE  L  L KR ++ G  +  L FC+ C+ GK  RV F  + HTT GILDYVHSD+WGP
Sbjct: 415  MSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 474

Query: 1889 ASTQSHSGGQFFVSFIDDFSRKVWVFVMRQKSDVFDKFKQWLALVENQTGRRLKVLRSDN 2068
            A   S  G ++ ++ +DD+SRKVW + ++ K   FD FK+W  +VE QT R++K+LR+DN
Sbjct: 475  AHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDN 534

Query: 2069 DGEYKSGEFLKFCKDKGIQRHFTTPHDPQSNGVAERMNRTLLEKARCMRISAGFSKVFWA 2248
              E+ S  F  +CK +GI  H+T PH PQ N VAERMNRT++ KARCM  +AG  K FWA
Sbjct: 535  GMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWA 594

Query: 2249 ETLYTAAHLINRLPCSSINGKIPEEVWRGNKPVNIGYLRIFGCPVYVHNIAKDKLDPRAI 2428
            E + TA +LINR P  +I+ K P EVW G+ P N   LR+FGC  Y H +   KL+PRAI
Sbjct: 595  EAVSTACYLINRSPGYAIDKKTPIEVWSGS-PTNYSDLRVFGCTAYAH-VDNGKLEPRAI 652

Query: 2429 QGKLLGFTNGIKGYRIWNPETRKVIHSRHVTFDEESMM--KPMDTTVEVDSFTPSSNKVT 2602
            +   LG+ +G+KGY++W PET+KV+ SR+V F E  ++  KP  T V V+S   +S +V 
Sbjct: 653  KCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKP-STNVPVESQEKASVQVE 711

Query: 2603 -FGDQENPPEPSSTCPQDNSPMQEDVSPQGGTRTPIQEESPNQGGTIPKVPVRASNRTIK 2779
                  + PE        ++P+ ED      + + I  +SP +      +      R IK
Sbjct: 712  HLISSGHAPEKEDVAINQDAPVIED------SDSSIVHQSPKR-----SIAKDKPKRNIK 760

Query: 2780 PPERFGEWSYANMTFSDQLDYALHVV-----HDEPSDYREVLESKDSTKWVDAMKEEMDS 2944
            PP R+ E +         + YAL V      + EPS Y E + S D  +W+ AM +EM+S
Sbjct: 761  PPRRYIEEAKI-------VAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMES 813

Query: 2945 LSKNQTWDLVRLPRDCRAIGCKWVFKVK------DNGRFKARLVAKGYTQRKGIEYDDIF 3106
            L KN TW+LV+LP++ + I CKW+FK K      D  R+KARLVAKGY+Q  GI+++D+F
Sbjct: 814  LEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVF 873

Query: 3107 APVVRHTSIRVILSMVACQDMELEQLDVKTAFLHGDLEETIYMKQPKGFVEDGKADLVCK 3286
            +PVV+H+SIR +L +VA  D ELEQ++VKTAFLHG+LEE IYM+QP+GFV  GK +LVC+
Sbjct: 874  SPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCR 933

Query: 3287 LKKSLYGLKQSPRQWYKRFDLFMLGIGFKRSVKDPCVYFRCTHDTWIYLLLYVDDMLIAC 3466
            LKKSLYGLKQSPRQWYKRFD FML   F+ S  D CVY +    + IYLLLYVDDMLIA 
Sbjct: 934  LKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGSVIYLLLYVDDMLIAA 993

Query: 3467 KDAMEVAKLKQSLKTEFDMKDLGHASKILGMEIIRDREAKTLKLTQREYIQKVLGRFNM 3643
            KD  E+ KLK  L +EF+MKDLG A KILGMEI R+R +  L L+Q+ YI+KVL RFNM
Sbjct: 994  KDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNM 1052


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  783 bits (2023), Expect = 0.0
 Identities = 442/1092 (40%), Positives = 627/1092 (57%), Gaps = 30/1092 (2%)
 Frame = +2

Query: 458  FGKWQWKMKAVLRRNRVHRVVYDLEQLPPNISDIEKQEMEEWAFTTLQLAIDERVISEVE 637
            F  WQ KM+ +L +   +    D           E+   ++ A   +QL +   ++ E  
Sbjct: 14   FSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQLHLHNDILQECL 73

Query: 638  NETTARGIWXXXXXXXXXXXXPNRLILMKTFFTYKMKEGTSIDSHLANFDDLLMKMKAMG 817
             E T+  +W             +++ +    FT KMKE  S+ +H+A F  ++  + +M 
Sbjct: 74   TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSME 133

Query: 818  LKFEDEQLAMVLLCSLPEKYVAFSNSLIYGRDTLTMEDVKTGLMSEVMIGDLKGLGEDKD 997
            +K++DE L ++LLCSLP  Y  F ++++  RD LT+++V   L ++     +K + ++  
Sbjct: 134  VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK---MKIMVQNDG 190

Query: 998  TSSSHGLNAXXXXXXXXXXXXXXXXXXXXXXXXXXARSKGRGN---CHYCHASDHWVRDC 1168
            +SSS G                             ++SK  GN   C YC   +H + +C
Sbjct: 191  SSSSKG-----EALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDEC 245

Query: 1169 PKLKSKEQNEGS------TSSXXXXXXXXXXXXXXXXXXSPH-KWILDSGASFHMTPNKE 1327
             K+++KE+           S+                  + H +WILDS  SFH+   + 
Sbjct: 246  KKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRN 305

Query: 1328 CFDTLDE-KEGSTIMMANNSACKCMGIGTVRVKMFDGRTRTITNVRYVPTMSKSLISLGQ 1504
             F +    ++G  + M +++ C  +GIG+V++K  DG TRT+ NVRY+P MS++LISL  
Sbjct: 306  WFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLST 365

Query: 1505 LANIGCKVSIVGDTMKVSRGNLVIAKGTRAQNNLYFLEGQTVEG-DACVGANISKKLDPT 1681
            L   G K S     +KVS+G+LV  KG      LY L G T+ G D+   A  + +   T
Sbjct: 366  LDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKT 425

Query: 1682 KLWHLRLGHTSEGNLHVLRKRKMIKGNDLGSLDFCKDCVLGKQTRVTFGVAKHTTAGILD 1861
             LWH+RLGH S   +  L KR ++KG     + FC+ C+ GK  RV F  + HTT G LD
Sbjct: 426  NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 1862 YVHSDVWGPASTQSHSGGQFFVSFIDDFSRKVWVFVMRQKSDVFDKFKQWLALVENQTGR 2041
            YVH+D+WGP+   S  G ++ ++ IDD+SRKVW + ++ K D F  FK W  ++E QT R
Sbjct: 486  YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 2042 RLKVLRSDNDGEYKSGEFLKFCKDKGIQRHFTTPHDPQSNGVAERMNRTLLEKARCMRIS 2221
            ++K+LR+DN GE+ S  F  +C+ +GI RH T PH PQ NGVAERMNRT++ +ARCM   
Sbjct: 546  KVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSH 605

Query: 2222 AGFSKVFWAETLYTAAHLINRLPCSSINGKIPEEVWRGNKPVNIGYLRIFGCPVYVHNIA 2401
            A  +K FWAE   TA +LINR P   +N K P EVW G  P +   L++FGC  Y H + 
Sbjct: 606  ARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGT-PADYSQLKVFGCTAYAH-VD 663

Query: 2402 KDKLDPRAIQGKLLGFTNGIKGYRIWNPETRKVIHSRHVTFDEESMMK---PMDTTVEVD 2572
              KL+PRA++   LG+ +G+KGY++WNPET K   SR V F+E  M     P +   E +
Sbjct: 664  NGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKE 723

Query: 2573 SFTPSSNKVTFGDQENPPEPSSTCPQD--NSPMQEDVSPQGGTRTP----IQEESPNQGG 2734
                   +V   D +   +      QD  N+ + +D +     +TP    ++EE P    
Sbjct: 724  -LQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 2735 TIPKVPVRASNRTIKPPERFGE---WSYANMTFSDQLDYALHVVHDEPSDYREVLESKDS 2905
                +  R S RT KPP+R  E    SY  ++ ++Q++     VH EP+ Y+E +   DS
Sbjct: 779  ----IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVEN----VH-EPATYKEAVRCGDS 829

Query: 2906 TKWVDAMKEEMDSLSKNQTWDLVRLPRDCRAIGCKWVFKVKDN------GRFKARLVAKG 3067
              W+ AM EEM SL KN TW++V LP+  + I CKW+FK K+        ++KARLVA+G
Sbjct: 830  ENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARG 889

Query: 3068 YTQRKGIEYDDIFAPVVRHTSIRVILSMVACQDMELEQLDVKTAFLHGDLEETIYMKQPK 3247
            Y+Q  G++Y+D+F+PVV+H+SIR  LS+VA  D+ELEQLDVKTAFLHG+LEE IYM QP+
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 3248 GFVEDGKADLVCKLKKSLYGLKQSPRQWYKRFDLFMLGIGFKRSVKDPCVYFRCTHDTWI 3427
            GF+  GK   VCKLK+SLYGLKQSPRQW KRFD FML   FKRS  D CVY +  + + I
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPI 1009

Query: 3428 YLLLYVDDMLIACKDAMEVAKLKQSLKTEFDMKDLGHASKILGMEIIRDREAKTLKLTQR 3607
            YLLLYVDDMLIA K  +E+ KLK+ L +EFDMKDLG A KILGMEI RDR++  L L+Q 
Sbjct: 1010 YLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQH 1069

Query: 3608 EYIQKVLGRFNM 3643
             YI+KVL RFNM
Sbjct: 1070 NYIKKVLQRFNM 1081