BLASTX nr result

ID: Atractylodes22_contig00005959 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00005959
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178116.5| coatomer subunit beta'-1 [Arabidopsis thaliana]...    72   5e-11
ref|XP_002304183.1| predicted protein [Populus trichocarpa] gi|2...    70   1e-10
ref|NP_001154478.1| coatomer subunit beta'-1 [Arabidopsis thalia...    70   2e-10
ref|NP_001154480.1| coatomer subunit beta'-1 [Arabidopsis thalia...    70   2e-10
ref|NP_175645.1| coatomer subunit beta'-2 [Arabidopsis thaliana]...    69   3e-10

>ref|NP_178116.5| coatomer subunit beta'-1 [Arabidopsis thaliana]
           gi|332198218|gb|AEE36339.1| coatomer subunit beta'-1
           [Arabidopsis thaliana]
          Length = 1135

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 31/67 (46%), Positives = 47/67 (70%)
 Frame = +1

Query: 181 VKELQIALQYQIPPVKIKFQSTFSLKSRMVHAVDLHPTEPWVLLGLFCGVVCIWNYRTQV 360
           V+   IAL++   P++++ +  F+ +S  V +VDLHPTEPW+L  L+ G +CIWNY+TQ 
Sbjct: 206 VRVFLIALKFD--PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQT 263

Query: 361 MEKSFGI 381
           M KSF +
Sbjct: 264 MVKSFDV 270


>ref|XP_002304183.1| predicted protein [Populus trichocarpa] gi|222841615|gb|EEE79162.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 26/62 (41%), Positives = 44/62 (70%)
 Frame = +1

Query: 196 IALQYQIPPVKIKFQSTFSLKSRMVHAVDLHPTEPWVLLGLFCGVVCIWNYRTQVMEKSF 375
           +  ++ + P++++ +   + +S  V +VDLHPTEPW+L+ L+ G VCIWNY++Q M KSF
Sbjct: 26  LVTKWSVQPLRLEIKRKLAQRSERVKSVDLHPTEPWILVSLYSGTVCIWNYQSQTMAKSF 85

Query: 376 GI 381
            +
Sbjct: 86  EV 87


>ref|NP_001154478.1| coatomer subunit beta'-1 [Arabidopsis thaliana]
           gi|146286086|sp|Q9CAA0.2|COB21_ARATH RecName:
           Full=Coatomer subunit beta'-1; AltName: Full=Beta'-coat
           protein 1; Short=Beta'-COP 1
           gi|5902363|gb|AAD55465.1|AC009322_5 Putative coatomer
           protein complex, subunit beta 2 (beta prime)
           [Arabidopsis thaliana] gi|20259354|gb|AAM14001.1|
           putative coatomer protein complex, subunit beta 2 (beta
           prime) [Arabidopsis thaliana]
           gi|332198217|gb|AEE36338.1| coatomer subunit beta'-1
           [Arabidopsis thaliana]
          Length = 920

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 27/54 (50%), Positives = 40/54 (74%)
 Frame = +1

Query: 220 PVKIKFQSTFSLKSRMVHAVDLHPTEPWVLLGLFCGVVCIWNYRTQVMEKSFGI 381
           P++++ +  F+ +S  V +VDLHPTEPW+L  L+ G +CIWNY+TQ M KSF +
Sbjct: 2   PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDV 55


>ref|NP_001154480.1| coatomer subunit beta'-1 [Arabidopsis thaliana]
           gi|332198220|gb|AEE36341.1| coatomer subunit beta'-1
           [Arabidopsis thaliana]
          Length = 912

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 27/54 (50%), Positives = 40/54 (74%)
 Frame = +1

Query: 220 PVKIKFQSTFSLKSRMVHAVDLHPTEPWVLLGLFCGVVCIWNYRTQVMEKSFGI 381
           P++++ +  F+ +S  V +VDLHPTEPW+L  L+ G +CIWNY+TQ M KSF +
Sbjct: 2   PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDV 55


>ref|NP_175645.1| coatomer subunit beta'-2 [Arabidopsis thaliana]
           gi|75169434|sp|Q9C827.1|COB22_ARATH RecName:
           Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat
           protein 2; Short=Beta'-COP 2
           gi|12323125|gb|AAG51545.1|AC037424_10 coatomer complex
           subunit, putative; 33791-27676 [Arabidopsis thaliana]
           gi|332194671|gb|AEE32792.1| coatomer subunit beta'-2
           [Arabidopsis thaliana]
          Length = 926

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 27/54 (50%), Positives = 40/54 (74%)
 Frame = +1

Query: 220 PVKIKFQSTFSLKSRMVHAVDLHPTEPWVLLGLFCGVVCIWNYRTQVMEKSFGI 381
           P++++ +   + +S  V +VDLHPTEPW+L  L+ G +CIWNY+TQVM KSF +
Sbjct: 2   PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEV 55


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