BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00005470
         (5835 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   563   0.0  
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   574   e-176
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       518   e-167
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   519   e-156
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   534   e-154

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  563 bits (1452), Expect(3) = 0.0
 Identities = 325/923 (35%), Positives = 502/923 (54%), Gaps = 15/923 (1%)
 Frame = +3

Query: 1662 MYEFGDCLEDIQAVDLKYFGFQYTWTRAKNGNMGLLRKLDRVLVNPRFLCRFPSAFANFL 1841
            M +F   +      D+   G  +TW   +   + +++KLDRVL+N  +   F  +++ F 
Sbjct: 165  MRDFQQVINYCSLTDMAAQGPLFTWCNKREHGL-IMKKLDRVLINDCWNQTFSQSYSVFE 223

Query: 1842 PYGLSDHSPGILTLHME---KKKRAPTFKFQIFLAKHPRFLECVHVNWN----MPVEGFE 2000
              G SDH    ++L+ E   K +    FKF   L     F   V   W     + +    
Sbjct: 224  AGGCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTST 283

Query: 2001 MFRLSQRLKFLKTHLRKL-RSSYGNMRGRS-EKLRVEVHKLQSNMDSDPLNLSLRESHAS 2174
            +FR S+ LK LK  +R + R   GN+  ++ E  ++   K   N+ ++P ++++ E +A+
Sbjct: 284  LFRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNL-TNPSSMAMEEENAA 342

Query: 2175 KYADFLQAMEDEESYFKQRAKEHWLQSGDANTSFFHNAVKEKTCNHRIEAICDLQGNYY- 2351
             Y+ + +    EE Y KQ++K HW Q GD NT  FH A   +  ++ I  I    G    
Sbjct: 343  -YSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKT 401

Query: 2352 EGDHVPMQ---FVDYYTNLLGHSEDRRAPPLDSRLFTRKLSIEDAQDMVRPVSEAEIKEA 2522
            +GD +  +   F   +  L+ +  +        +L   + S  D Q ++RPV+  EI++ 
Sbjct: 402  KGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKV 461

Query: 2523 VFSIADDKAPGPDGYSSKFFKAAWEVIGADVTKAISEFFTNGELLQELDHTLISLIPKTA 2702
            +F +  DK+PGPDGY+S+FFKA WE+IG + T A+  FFT G L + ++ T+++LIPK  
Sbjct: 462  LFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKT 521

Query: 2703 APSKVLEFRPIACCNVVYKAITKIIANRMKGSLNLLVNENQSAFIPGRRITDNILLAHDL 2882
               ++ ++RPI+CCNV+YK I+KIIANR+K  L   +  NQSAF+  R + +N+LLA +L
Sbjct: 522  EAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATEL 581

Query: 2883 MDGYHLSQGMARCAMKVDIQKAYDTVDWKFLQSALLCFGFHHQMIQWIMQCVTNTSYSIV 3062
            +  YH      RCA+K+DI KA+D+V W FL +     GF  + I WI  C+T  S+S+ 
Sbjct: 582  VKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQ 641

Query: 3063 VNGEPHGFFYGKRGLRQGDPLSPYLFTLVMEVLTLMITCRVTKETRFRYHRGCEGLGITH 3242
            VNGE  G+F   RGLRQG  LSPYLF + M+VL+ M+  +      F YH  C+ +G+TH
Sbjct: 642  VNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLD-KAAAARHFGYHPKCKTMGLTH 700

Query: 3243 LCFADDLLMFCKGNKASVGILKAVLDDFALMSGLYPSLPKSTVFLCNVKDAHKTEILNVL 3422
            L FADDL++   G   S+  +  V D+FA  SGL  SL KSTV+L  +    + E+ +  
Sbjct: 701  LSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRF 760

Query: 3423 PFNEGILPVKYLGLPLFSARVAHKDCRGLVEKIRNRVNNWKNKTLSYAGRLQLINSVLGS 3602
            PF+ G LPV+YLGLPL + R++  DC  L+E++R R+ +W ++ LSYAGRL LI+SVL S
Sbjct: 761  PFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWS 820

Query: 3603 IFIYWGSALFLPSATSHEIERICRDFLWRNGKTGRGASRVAWDDVCLPKKHGGLGLRKLT 3782
            I  +W +A  LP     E+E++C  FLW   +     ++++W  VC PK  GGLGLR L 
Sbjct: 821  ICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLK 880

Query: 3783 TWNIALMSHHVRNLLRQKESLWVKWIHKVRLKTQSYWTV-VTPAKCSWNWKKFLGIREML 3959
              N       V  ++    SLWVKW+ +  L+  S+W V  T ++ SW WKK L  RE+ 
Sbjct: 881  EANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVA 940

Query: 3960 RPRFKHVVGDGNITSAWHDQWLPGGPLSDKLTEQQIVRAGFNMNARVADLYHDGERRWPL 4139
            +   K  VG+G  TS W+D W   G L ++  ++ ++  G +    V + + +  +R   
Sbjct: 941  KTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHR 1000

Query: 4140 GWYGNAIPILHPDLPVDLSSQQDRVEWLNR-DGDQVDFSVKEAWNFMRQDGHEVDWCDIV 4316
                N I           +  +D+V W  + D  +  FS ++ W+  R     V W  ++
Sbjct: 1001 NDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVI 1060

Query: 4317 WHRFCIPRHTFILWMAYRNCLPT 4385
            W     P+++F  W+A    LPT
Sbjct: 1061 WFSHATPKYSFCSWLAAHGRLPT 1083



 Score = 82.8 bits (203), Expect(3) = 0.0
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
 Frame = +2

Query: 1190 WNIQGLNTVGKQTEVRRLISENCLSICSIVETKVQPVNLGRICSTIFGGWSWVTNQSACL 1369
            WN++GLN   K + +++ I EN      +VET+V+   + ++   +F  WS +TN     
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 1370 GGTRIITGWDPAEVNLMVLGMTNQIMHCKVRFLASREVMFLSFVYASNCYIERRVLWNSL 1549
             G RI   W    V L  +  + Q++ C V+    ++  F SFVYASN   ER+VLW+ L
Sbjct: 66   RG-RIWVLW-RKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSEL 123

Query: 1550 RGF--EGLVGNTAWGIMGDFNVTL 1615
            +      ++ +  W ++GDFN TL
Sbjct: 124  KDHYDSPIIRHKPWTLLGDFNETL 147



 Score = 60.5 bits (145), Expect(3) = 0.0
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
 Frame = +2

Query: 4388 ERMLCWKDQPPDPRCLFCKKVPDSRNHLFFECHFPKKVWQRFKKDGQGSLMGDNWDDITL 4567
            +RM+ W +      C+FC+   ++R+HLFF C F   +W    +    +    +W  I +
Sbjct: 1085 DRMINWANGIATD-CIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSI-I 1142

Query: 4568 YFINNVKNKSFYIVLQQVGFAAMVYHIWRERNKRLHNRISSTVAKVYKDVVDDIRGKLMH 4747
              I N ++      L++  F A +Y +WRERN R H    +T +++   +   IR +L  
Sbjct: 1143 EAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLSS 1202

Query: 4748 ---GGSKRLAIPDSLAQVW 4795
                G KR    D   QVW
Sbjct: 1203 ICLKGDKRY---DGSLQVW 1218


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  574 bits (1480), Expect(2) = e-176
 Identities = 330/956 (34%), Positives = 514/956 (53%), Gaps = 14/956 (1%)
 Frame = +3

Query: 1638 GKAQMEAMMYEFGDCLEDIQAVDLKYFGFQYTWTRAKNGNMGLLRKLDRVLVNPRFLCRF 1817
            G +++   M EF +CL      DL + G  YTW   +  N  + +K+DR+LVN  +L   
Sbjct: 156  GGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNP-IAKKIDRILVNDSWLIAS 214

Query: 1818 PSAFANFLPYGLSDHSPGILTLHMEKKKRAPTFKFQIFLAKHPRFLECVHVNWN-MPVEG 1994
            P ++ +F     SDH P  + +  +   R   FK   FL  HP F+E + V W+ +  +G
Sbjct: 215  PLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQG 274

Query: 1995 FEMFRLSQRLKFLKTHLRKL-RSSYGNMRGRSEKLRVEVHKLQSNMDSDPLNLSL---RE 2162
              MF LS++ KFLK  +R   R  Y  +  R  +    +   Q+N+ + P +      +E
Sbjct: 275  SAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKE 334

Query: 2163 SHASKYADFLQAMEDEESYFKQRAKEHWLQSGDANTSFFHNAVKEKTCNHRIEAICDLQG 2342
            +H S +A+   A   EE +  Q+++  WL+ GD+NT+FFH  +  +   + I  + D  G
Sbjct: 335  AHRS-WAELALA---EERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTG 390

Query: 2343 NYYEG-DHVPMQFVDYYTNLLGHSEDRRAPPLDSRL--FTRKLSIEDAQDMVRP-VSEAE 2510
               E  D +    VD++  L G S    +    S++   TR    E+ + ++   VSEA+
Sbjct: 391  RRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEAD 450

Query: 2511 IKEAVFSIADDKAPGPDGYSSKFFKAAWEVIGADVTKAISEFFTNGELLQELDHTLISLI 2690
            IK   F++  +K+PGPDGY+S+FFK  W ++G  +  A+ EFF +G LL + + T ++++
Sbjct: 451  IKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMV 510

Query: 2691 PKTAAPSKVLEFRPIACCNVVYKAITKIIANRMKGSLNLLVNENQSAFIPGRRITDNILL 2870
            PK     ++ EFRPI+CCN +YK I+K++A R++  L L ++ +QSAF+ GR +T+N+LL
Sbjct: 511  PKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLL 570

Query: 2871 AHDLMDGYHLSQGMARCAMKVDIQKAYDTVDWKFLQSALLCFGFHHQMIQWIMQCVTNTS 3050
            A +L+ G+  +   +R  +KVD++KA+D+V W F+   L       + + WI QC+T+TS
Sbjct: 571  ATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTS 630

Query: 3051 YSIVVNGEPHGFFYGKRGLRQGDPLSPYLFTLVMEVLTLMITCRVTKETRFRYHRGCEGL 3230
            +SI V+G   G+F G +GLRQGDPLSP LF + ME+L+ ++  + + +    YH     +
Sbjct: 631  FSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFS-DGSIGYHPKASEV 689

Query: 3231 GITHLCFADDLLMFCKGNKASVGILKAVLDDFALMSGLYPSLPKSTVFLCNVKDAHKTEI 3410
             I+ L FADDL++F  G  +S+  +K+VL+ F  +SGL  +  KS V+   ++D  K + 
Sbjct: 690  RISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDT 749

Query: 3411 LNVLPFNEGILPVKYLGLPLFSARVAHKDCRGLVEKIRNRVNNWKNKTLSYAGRLQLINS 3590
            L    F  G  P +YLGLPL   ++   D   L++KI  R N+W  KTLS+AGRLQLI+S
Sbjct: 750  L-AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISS 808

Query: 3591 VLGSIFIYWGSALFLPSATSHEIERICRDFLWRNGKTGRGASRVAWDDVCLPKKHGGLGL 3770
            V+ S   +W S+  LP      IE++C  FLW N  T RG  +V+W + CLPK  GGLGL
Sbjct: 809  VIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGL 868

Query: 3771 RKLTTWNIALMSHHVRNLLRQKESLWVKWIHKVRLKTQSYWTVVTPAKCSWNWKKFLGIR 3950
            R   TWN  L    +  L  +++SLWV W H  RL+  ++W     +  SW WK  LG+R
Sbjct: 869  RNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLR 928

Query: 3951 EMLRPRFKHVVGDGNITSAWHDQWLPGGPLSDKLTEQQIVRAGFNMNARVADLYHDGERR 4130
             + +   +  VG+G + S W+D W   GPL + +        G + +A V +        
Sbjct: 929  PLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWI 988

Query: 4131 WPLGWYGNA-IPILHPDLPVDLSSQQDRVE----WLNRDGDQVDFSVKEAWNFMRQDGHE 4295
             P     NA +  L   L    +   DR E    W         FS K  W  +RQ    
Sbjct: 989  LPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTT 1048

Query: 4296 VDWCDIVWHRFCIPRHTFILWMAYRNCLPTQSACCAGKINRLILDVCFVRKSLTQE 4463
              W   VW++ CIP++ F  W+A+ N LP ++       NR  L     R++ T++
Sbjct: 1049 KLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRD 1104



 Score = 73.6 bits (179), Expect(2) = e-176
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
 Frame = +2

Query: 1172 MIKCGVWNIQGLNTVGKQTEVRRLISENCLSICSIVETKVQPVNLGRICSTIFGGWSWVT 1351
            MI    WN++G N   ++   R+    +     SI+ET+V+     R   + F GW  V 
Sbjct: 1    MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVC 60

Query: 1352 N-QSACLGGTRIITGWDPAEVNLMVLGMTNQIMHCKVRFLASREVMFLSFVYASNCYIER 1528
            N + A LG  RI   WDPA V + VL  ++Q + C V+         ++FVYA NC   R
Sbjct: 61   NYEFAALG--RIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGR 117

Query: 1529 RVLWNSLR--GFEGLVGNTAWGIMGDFNVTLFLDDTEGGES 1645
            R LW+ L          +  W I+GDFN +L   D   G S
Sbjct: 118  RRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGS 158



 Score = 67.8 bits (164), Expect = 3e-08
 Identities = 33/114 (28%), Positives = 58/114 (50%)
 Frame = +2

Query: 4403 WKDQPPDPRCLFCKKVPDSRNHLFFECHFPKKVWQRFKKDGQGSLMGDNWDDITLYFINN 4582
            W    P   C  C++  ++R+HLF  C     +WQ+       S M   W DI  + ++N
Sbjct: 1085 WSTNRPS-LCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSN 1143

Query: 4583 VKNKSFYIVLQQVGFAAMVYHIWRERNKRLHNRISSTVAKVYKDVVDDIRGKLM 4744
                SF   L+++     ++HIW+ERN RLH+ +S++   ++K +   IR  ++
Sbjct: 1144 --QGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSIRDSIL 1195


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  518 bits (1335), Expect(3) = e-167
 Identities = 314/922 (34%), Positives = 483/922 (52%), Gaps = 13/922 (1%)
 Frame = +3

Query: 1662 MYEFGDCLEDIQAVDLKYFGFQYTWTRAKNGNMGLLRKLDRVLVNPRFLCRFPSAFANFL 1841
            M +F DCL   +  DL+Y G  +TW   K+    + +K+DR+LVN  +   FPS+   F 
Sbjct: 166  MRDFRDCLLAAELSDLRYKGNTFTWWN-KSHTTPVAKKIDRILVNDSWNALFPSSLGIFG 224

Query: 1842 PYGLSDH-SPGILTLHMEKKKRAPTFKFQIFLAKHPRFLECVHVNW-NMPVEGFEMFRLS 2015
                SDH S G++      K + P FKF  +L K+  FL  V  NW  + V G  MFR+S
Sbjct: 225  SLDFSDHVSCGVVLEETSIKAKRP-FKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVS 283

Query: 2016 QRLKFLKTHLRKL-RSSYGNMRGRSEKLRVEVHKLQSNM--DSDPLNLSLRESHASKYAD 2186
            ++LK LK  ++   R +Y  +  R+++    +   Q     D  P+N S  E  A +   
Sbjct: 284  KKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASF-ELEAERKWH 342

Query: 2187 FLQAMEDEESYFKQRAKEHWLQSGDANTSFFHNAVKEKTCNHRIEAICDLQGNYYEGDHV 2366
             L A E  ES+F+Q+++  W   GD NT +FH     +  ++ I A+ D  G   +    
Sbjct: 343  ILTAAE--ESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEG 400

Query: 2367 PMQF-VDYYTNLLGHSEDRRAPPLDSR--LFTRKLSIEDAQDMVRPVSEAEIKEAVFSIA 2537
             +     Y+ +LLG   D      +    L + + S     ++    S  +I+ A+FS+ 
Sbjct: 401  ILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLP 460

Query: 2538 DDKAPGPDGYSSKFFKAAWEVIGADVTKAISEFFTNGELLQELDHTLISLIPKTAAPSKV 2717
             +K+ GPDG++++FF  +W ++GA+VT AI EFF++G LL++ + T I LIPK   P+  
Sbjct: 461  RNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCT 520

Query: 2718 LEFRPIACCNVVYKAITKIIANRMKGSLNLLVNENQSAFIPGRRITDNILLAHDLMDGYH 2897
             +FRPI+C N +YK I +++ +R++  L+ +++  QSAF+PGR + +N+LLA DL+ GY+
Sbjct: 521  SDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYN 580

Query: 2898 LSQGMARCAMKVDIQKAYDTVDWKFLQSALLCFGFHHQMIQWIMQCVTNTSYSIVVNGEP 3077
             S    R  +KVD++KA+D+V W+F+ +AL       + I WI QC++  ++++ +NG  
Sbjct: 581  WSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGN 640

Query: 3078 HGFFYGKRGLRQGDPLSPYLFTLVMEVLTLMITCRVTKETRFRYHRGCEGLGITHLCFAD 3257
             GFF   +GLRQGDPLSPYLF L ME  + ++  R  +     YH     L I+HL FAD
Sbjct: 641  GGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRY-ESGLIHYHPKASNLSISHLMFAD 699

Query: 3258 DLLMFCKGNKASVGILKAVLDDFALMSGLYPSLPKSTVFLCNVKDAHKTEILNVLPFNEG 3437
            D+++F  G   S+  +   LDDFA  SGL  +  KS ++L  +    ++       F  G
Sbjct: 700  DVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQL-ESNANAAYGFPIG 758

Query: 3438 ILPVKYLGLPLFSARVAHKDCRGLVEKIRNRVNNWKNKTLSYAGRLQLINSVLGSIFIYW 3617
             LP++YLGLPL + ++   +   L+EKI  R  +W NK LS+AGR+QLI+SV+     +W
Sbjct: 759  TLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFW 818

Query: 3618 GSALFLPSATSHEIERICRDFLWRNGKTGRGASRVAWDDVCLPKKHGGLGLRKLTTWNIA 3797
             S   LP      IE +C  FLW          +V+W  +CLPK  GGLGLR+L  WN  
Sbjct: 819  MSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKT 878

Query: 3798 LMSHHVRNLLRQKESLWVKWIHKVRLKTQSYWTVVTPAKCSWNWKKFLGIREMLRPRFKH 3977
            L    +  L   K+SLW  W H   L   S+W V      SW WK+ L +R +       
Sbjct: 879  LSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVC 938

Query: 3978 VVGDGNITSAWHDQWLPGGPLSDKLTEQQIVRAGFNMNARVADLYHDGERRWPLGWYGNA 4157
             VG+G     W+D W   GPL   + +         + A+VA  + +   R P+     A
Sbjct: 939  KVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPA 998

Query: 4158 IPILHPDL---PVDLSSQQ--DRVEWLNRDGDQVDFSVKEAWNFMRQDGHEVDWCDIVWH 4322
              I H  L   PV  ++Q+  DR EW         FS  + W  +R       W   +W 
Sbjct: 999  KGI-HDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWF 1057

Query: 4323 RFCIPRHTFILWMAYRNCLPTQ 4388
            +  +P++ F +W+++ N L T+
Sbjct: 1058 KGAVPKYAFNMWVSHLNRLLTR 1079



 Score = 71.6 bits (174), Expect(3) = e-167
 Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
 Frame = +2

Query: 1190 WNIQGLNTVGKQTEVRRLISENCLSICSIVETKVQPVNLGRICSTIFGGWSWVTNQS-AC 1366
            WNI+G N V  ++  ++ +  N      ++ET V+     +  + +  GWS+V N + + 
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 1367 LGGTRIITGWDPAEVNLMVLGMTNQIMHCKVRFLASREVMFLSFVYASNCYIERRVLWNS 1546
            LG  +I   WDP+ V ++V+  + Q++ C+V    S   + +S VYA+N    R+ LW  
Sbjct: 68   LG--KIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIE 124

Query: 1547 LRGF--EGLVGNTAWGIMGDFNVTL 1615
            +      G++G+  W ++GDFN  L
Sbjct: 125  IVNMVVSGIIGDRPWLVLGDFNQVL 149



 Score = 52.0 bits (123), Expect(3) = e-167
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
 Frame = +2

Query: 4388 ERMLCWKDQPPDPRCLFCKKVPDSRNHLFFECHFPKKVWQR-FKKDGQGSLMGDNWDDIT 4564
            +R+  W     D  C+ C    +SR+HL   C F  +VW+  F++      +  +W ++ 
Sbjct: 1080 QRLASWGHIQSDA-CVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELL 1138

Query: 4565 LYFINNVKNKSFYIVLQQVGFAAMVYHIWRERNKRLHNRISSTVAKVYKDVVDDIR 4732
             +   +        +L+++    +VY++WR+RN  LHN +    A ++K V  +IR
Sbjct: 1139 SWVRQSSPEAP--PLLRKIVSQVVVYNLWRQRNNLLHNSLRLAPAVIFKLVDREIR 1192


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  519 bits (1336), Expect(2) = e-156
 Identities = 301/881 (34%), Positives = 468/881 (53%), Gaps = 18/881 (2%)
 Frame = +3

Query: 1836 FLPYGLSDHSP-GILTLHMEKKKRAPTFKFQIFLAKHPRFLECVHVNWN----MPVEGFE 2000
            + P G+ D    G L L          FKF   L K P+FL  V  +W     + V    
Sbjct: 521  YTPPGMRDFQEIGRLMLEAAATGGRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSA 580

Query: 2001 MFRLSQRLKFLKTHLRKL-RSSYGNMRGRSEKLRVEVHKLQSNMDSDPLNLSLRESHASK 2177
            ++R S++LK LK HLR+L +   G++  R+ +  + + + Q+   ++P   ++ E     
Sbjct: 581  LYRFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEE-LKA 639

Query: 2178 YADFLQAMEDEESYFKQRAKEHWLQSGDANTSFFHNAVKEKTCNHRIEAICDLQGNYYE- 2354
            Y D+    E EE + KQ++K HW+  GD N S+FH A + +   + I  I        + 
Sbjct: 640  YTDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQT 699

Query: 2355 GDHVPMQFVDYYTNLLGH-SEDRRAPPLDS--RLFTRKLSIEDAQDMVRPVSEAEIKEAV 2525
             + +  +   ++   L   S D     ++    L + + S+ D   + R V+  EI++ +
Sbjct: 700  SEEIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVL 759

Query: 2526 FSIADDKAPGPDGYSSKFFKAAWEVIGADVTKAISEFFTNGELLQELDHTLISLIPKTAA 2705
            F++ ++K+PGPDGY+S+FFKA W + G D   AI  FF  G L + L+ T+++LIPK   
Sbjct: 760  FAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDE 819

Query: 2706 PSKVLEFRPIACCNVVYKAITKIIANRMKGSLNLLVNENQSAFIPGRRITDNILLAHDLM 2885
              ++ ++RPI+CCNV+YK I+KI+ANR+K  L   + +NQSAF+  R + +N+LLA +L+
Sbjct: 820  AIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELV 879

Query: 2886 DGYHLSQGMARCAMKVDIQKAYDTVDWKFLQSALLCFGFHHQMIQWIMQCVTNTSYSIVV 3065
              YH      RCAMK+DI KA+D+V W+FL + L    F      WI  C++  ++S+ V
Sbjct: 880  KDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQV 939

Query: 3066 NGEPHGFFYGKRGLRQGDPLSPYLFTLVMEVLTLMITCRVTKETRFRYHRGCEGLGITHL 3245
            NGE  GFF   RGLRQG  LSPYLF + M VL+ MI           YH  CE +G+THL
Sbjct: 940  NGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMID-EAAVHRNIGYHPKCEKIGLTHL 998

Query: 3246 CFADDLLMFCKGNKASVGILKAVLDDFALMSGLYPSLPKSTVFLCNVKDAHKTEILNVLP 3425
            CFADDL++F  G++ S+  +  V  +FA  SGL  SL KST++L  V  + + + L+  P
Sbjct: 999  CFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFP 1058

Query: 3426 FNEGILPVKYLGLPLFSARVAHKDCRGLVEKIRNRVNNWKNKTLSYAGRLQLINSVLGSI 3605
            F  G LPV+YLGLPL + ++   D   L+E ++ ++++W  ++LSYAGRL L+NSV+ SI
Sbjct: 1059 FANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSI 1118

Query: 3606 FIYWGSALFLPSATSHEIERICRDFLWRNGKTGRGASRVAWDDVCLPKKHGGLGLRKLTT 3785
              +W SA  LP+    EIE++C  FLW         +++AW  +C PKK GGLG++ L  
Sbjct: 1119 ANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAE 1178

Query: 3786 WNIALMSHHVRNLLRQKESLWVKWIHKVRLKTQSYWTVVTPAKC-SWNWKKFLGIREMLR 3962
             N       +  LL  + SLWV WI    ++  ++W+    +   SW WKK L  RE+ +
Sbjct: 1179 ANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAK 1238

Query: 3963 PRFKHVVGDGNITSAWHDQWLPGGPLSDKLTEQQIVRAGFNMNARVADLYHDGERRWPLG 4142
               K  V +G+ TS W+D W   G L D    ++++  G  +   +  +    + R    
Sbjct: 1239 SMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRA 1298

Query: 4143 WYGNAIPILHPDLPVDLSSQQDRVE------WLNRDGD-QVDFSVKEAWNFMRQDGHEVD 4301
               N I     +  +    QQ+R        W +   D    F  K  WN +R    + +
Sbjct: 1299 AIYNRI-----NAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQN 1353

Query: 4302 WCDIVWHRFCIPRHTFILWMAYRNCLPTQSACCAGKINRLI 4424
            W   VW  +  P+++F+LW+  +N L T     A    +L+
Sbjct: 1354 WYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLV 1394



 Score = 64.3 bits (155), Expect(2) = e-156
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +2

Query: 4430 CLFCKKVPDSRNHLFFECHFPKKVWQRFKKDGQGSLMGDNWDDI-TLYFINNVKNKSFYI 4606
            C  C    ++R+HLFF C +   VW+   +    +    +W+ + TL   +N+     ++
Sbjct: 1396 CTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRD--HL 1453

Query: 4607 VLQQVGFAAMVYHIWRERNKRLHNRISSTVAKVYKDVVDDIRGKL 4741
             L +  F A +YHIWRERN R H  ISS   ++ K +   +R ++
Sbjct: 1454 FLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRI 1498



 Score = 63.5 bits (153), Expect = 6e-07
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
 Frame = +3

Query: 6   WLIKNMPIFLNKWTVDSCTSKPDHKSLPIWVKFLDLPLGLWSVNSLSRLASTMGIP--LA 179
           W I +MP+ ++KW+  +  ++P+ K++P+W+   ++P  +++   LS LAS +G P  L 
Sbjct: 129 WNIADMPMIVSKWSPVAEDAQPEIKTMPMWITIKNVPRSMFTWKGLSFLASPIGEPKKLH 188

Query: 180 ADSVTLDMCLNRWGRPNFARMLINVSAEFALKQSIDVDIPKLDSEGFSVAKINVDYDWIP 359
            D+V  +         +F    + V A+  L Q +     +  SE    A +   Y W+P
Sbjct: 189 PDTVLCN---------SFEEAKVFVEAD--LTQEMPKQF-RFKSETGVDAMVEYKYPWLP 236

Query: 360 PRCSHCKVFGH 392
           PRCS C  +GH
Sbjct: 237 PRCSSCSKWGH 247


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  534 bits (1375), Expect(2) = e-154
 Identities = 325/931 (34%), Positives = 476/931 (51%), Gaps = 18/931 (1%)
 Frame = +3

Query: 1650 MEAMMYEFGDCLEDIQAVDLKYFGFQYTWTRAKNGNMGLLRKLDRVLVNPRFLCRFPSAF 1829
            ++  M +FG CL +++  DL + G  +TW   K+    + +KLDR+L N  +   +PS+ 
Sbjct: 22   IDRRMRDFGSCLSEMELSDLVFKGNSFTWWN-KSSIRPIAKKLDRILANDSWCNLYPSSH 80

Query: 1830 ANFLPYGLSDHSPGILTLHMEKKKRAPTFKFQIFLAKHPRFLECVHVNW-NMPVEGFEMF 2006
              F     SDH    + L          FKF  FL K+  FL  V  NW +  V G  M+
Sbjct: 81   GLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMY 140

Query: 2007 RLSQRLKFLKTHLRKL-RSSYGNMRGRSEKLRVEVHKLQSNMDSDPLNLSLRESHASKYA 2183
            R+S++LK +K  ++   R +Y  +  R++    E H+L         NL+L     S  A
Sbjct: 141  RVSKKLKAMKKPIKDFSRLNYSGIELRTK----EAHELLITCQ----NLTLANPSVSNAA 192

Query: 2184 DFLQAMED-------EESYFKQRAKEHWLQSGDANTSFFHNAVKEKTCNHRIEAICDLQG 2342
              L+A          EES+F QR++  W   GD+NT +FH  V  +   + I ++ D  G
Sbjct: 193  LELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNG 252

Query: 2343 NYYEGDHVPMQF-VDYYTNLLGHSEDRRAPPLDSR--LFTRKLSIEDAQDMVRPVSEAEI 2513
               +     +   V YY  LLG  E   +   +    L T + S +   ++ +  ++ EI
Sbjct: 253  LLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEI 312

Query: 2514 KEAVFSIADDKAPGPDGYSSKFFKAAWEVIGADVTKAISEFFTNGELLQELDHTLISLIP 2693
            K A  S+  +K  GPDGYS +FF+  W +IG +V  AI EFF +G+LL++ + T + LIP
Sbjct: 313  KAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIP 372

Query: 2694 KTAAPSKVLEFRPIACCNVVYKAITKIIANRMKGSLNLLVNENQSAFIPGRRITDNILLA 2873
            KT+    + EFRPI+C N +YK I+K++ +R++G L+ ++  +QSAF+PGR + +N+LLA
Sbjct: 373  KTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLA 432

Query: 2874 HDLMDGYHLSQGMARCAMKVDIQKAYDTVDWKFLQSALLCFGFHHQMIQWIMQCVTNTSY 3053
             +++ GY+      R  +KVD++KA+D+V W+F+ +AL       + I WI QC+T  S+
Sbjct: 433  TEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSF 492

Query: 3054 SIVVNGEPHGFFYGKRGLRQGDPLSPYLFTLVMEVLTLMITCRVTKETRFRYHRGCEGLG 3233
            +I VNG   GFF   +GLRQGDPLSPYLF L MEV + ++  R        YH     L 
Sbjct: 493  TISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRY-DSGYIHYHPKAGDLS 551

Query: 3234 ITHLCFADDLLMFCKGNKASVGILKAVLDDFALMSGLYPSLPKSTVFLCNVKDAHKTEIL 3413
            I+HL FADD+++F  G  +S+  +   LDDFA  SGL  +  KS +F   + D  +    
Sbjct: 552  ISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERITS 610

Query: 3414 NVLPFNEGILPVKYLGLPLFSARVAHKDCRGLVEKIRNRVNNWKNKTLSYAGRLQLINSV 3593
                F  G  P++YLGLPL   ++   D   L+EK+  R+ +W +K LS+AGR QLI+SV
Sbjct: 611  AAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSV 670

Query: 3594 LGSIFIYWGSALFLPSATSHEIERICRDFLWRNGKTGRGASRVAWDDVCLPKKHGGLGLR 3773
            +  +  +W S   LP     +IE +C  FLW     GR +S+V+W D CLPK  GGLG R
Sbjct: 671  IFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFR 730

Query: 3774 KLTTWNIALMSHHVRNLLRQKESLWVKWIHKVRLKTQSYWTVVTPAKCSWNWKKFLGIRE 3953
                WN  L+   +  L  +  SLW +W    RL   S+W V       W WK  L +R 
Sbjct: 731  SFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRP 790

Query: 3954 MLRPRFKHVVGDGNITSAWHDQWLPGGPLSDKLTEQQIVRAGFNMNARVADLYHDGERRW 4133
            +     K  VG+G   S W D W   GPL   L +          +A+VAD       R 
Sbjct: 791  LAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRL 850

Query: 4134 PLGWYGNAIPILH------PDLPVDLSSQQDRVEWLNRDGDQVDFSVKEAWNFMRQDGHE 4295
            PL     A  IL       P  P+ +S   D   W   D D   FS  + W  +R     
Sbjct: 851  PLSRSLTADSILSHLASLPPPSPLMVS---DSYSWCVDDVDCQGFSAAKTWEVLRPRRPV 907

Query: 4296 VDWCDIVWHRFCIPRHTFILWMAYRNCLPTQ 4388
              W   VW +  +P+H F  W A  N LPT+
Sbjct: 908  KRWAKSVWFKGAVPKHAFNFWTAQLNRLPTR 938



 Score = 42.0 bits (97), Expect(2) = e-154
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
 Frame = +2

Query: 4388 ERMLCWKDQPPDPRCLFCKKVPDSRNHLFFECHFPKKVWQR-FKKDGQGSLMGDNWDDIT 4564
            +R++ W        C  C    ++R+HL   C F  +VW+  F +      +   W ++ 
Sbjct: 939  QRLVSW-GLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELL 997

Query: 4565 LYFINNVKNKSFYIVLQQVGFAAMVYHIWRERNKRLHNRISSTVAKVYKDVVDDIRGKLM 4744
             +        +   +L++V    +VY++WR+RN  LH+ +  + + V++ V  ++R  ++
Sbjct: 998  SW--TRQSTAAAPSLLRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVIL 1055

Query: 4745 HGGSKR 4762
                KR
Sbjct: 1056 SRRHKR 1061