BLASTX nr result

ID: Atractylodes22_contig00004946 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00004946
         (1010 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281228.1| PREDICTED: RNA-binding protein 8A [Vitis vin...   211   3e-52
ref|XP_002513523.1| polyadenylate-binding protein, putative [Ric...   209   7e-52
ref|NP_001236162.1| uncharacterized protein LOC100527187 [Glycin...   203   5e-50
ref|XP_002314085.1| predicted protein [Populus trichocarpa] gi|2...   202   1e-49
gb|ABK96138.1| unknown [Populus trichocarpa]                          202   1e-49

>ref|XP_002281228.1| PREDICTED: RNA-binding protein 8A [Vitis vinifera]
           gi|296088561|emb|CBI37552.3| unnamed protein product
           [Vitis vinifera]
          Length = 202

 Score =  211 bits (536), Expect = 3e-52
 Identities = 105/140 (75%), Positives = 118/140 (84%), Gaps = 2/140 (1%)
 Frame = +2

Query: 203 PIPKLKXXXXXXXXXXXXV-PKKTKGRGFREETDAGRTNRMSGR-FDSLDSDGGPGPERS 376
           P+PKLK              PKKTKGRGFR++TDA R +R + R FDSLDSDGGPGP+RS
Sbjct: 35  PLPKLKSAITGGAPSSLAAAPKKTKGRGFRDDTDADRNSRFAARDFDSLDSDGGPGPQRS 94

Query: 377 IEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENLEEAKK 556
           IEGWIILVTGVHEEAQEDDLQNAFGEFGE+KNLHLNLDRRTGFVKGYALIEYENLEEA+ 
Sbjct: 95  IEGWIILVTGVHEEAQEDDLQNAFGEFGEVKNLHLNLDRRTGFVKGYALIEYENLEEAQA 154

Query: 557 AITSMDGGELLTQIVNVDWA 616
           AI++M+G ELLTQ ++VDWA
Sbjct: 155 AISAMNGTELLTQTISVDWA 174


>ref|XP_002513523.1| polyadenylate-binding protein, putative [Ricinus communis]
           gi|223547431|gb|EEF48926.1| polyadenylate-binding
           protein, putative [Ricinus communis]
          Length = 199

 Score =  209 bits (533), Expect = 7e-52
 Identities = 103/140 (73%), Positives = 114/140 (81%), Gaps = 2/140 (1%)
 Frame = +2

Query: 203 PIPKLKXXXXXXXXXXXXVPKKTKGRGFREETDAGRTNRMSGR--FDSLDSDGGPGPERS 376
           P+PKLK             P+KTKGRGFREE DA R  R++ R  FDSL +DGGPGP+RS
Sbjct: 34  PLPKLKSAITGGAASSLSAPRKTKGRGFREEADADRQTRLASRGDFDSLGTDGGPGPQRS 93

Query: 377 IEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENLEEAKK 556
           IEGWIILVTGVHEEAQEDDLQNAFG+FGEIKNLHLNLDRRTGFVKGYALIEYE  EEA+ 
Sbjct: 94  IEGWIILVTGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQN 153

Query: 557 AITSMDGGELLTQIVNVDWA 616
           AI S++G ELLTQI+NVDWA
Sbjct: 154 AIASLNGTELLTQIINVDWA 173


>ref|NP_001236162.1| uncharacterized protein LOC100527187 [Glycine max]
           gi|255631742|gb|ACU16238.1| unknown [Glycine max]
          Length = 204

 Score =  203 bits (517), Expect = 5e-50
 Identities = 100/139 (71%), Positives = 112/139 (80%), Gaps = 1/139 (0%)
 Frame = +2

Query: 203 PIPKLKXXXXXXXXXXXXVPKKTKGRGFREETDAGRTNRMSGR-FDSLDSDGGPGPERSI 379
           P PKLK             PKKTKGRGFR++TDA R  R+SG  FDSL ++GGPGP+RSI
Sbjct: 36  PQPKLKSAITPAATSSLSAPKKTKGRGFRQDTDANRNTRLSGTDFDSLTAEGGPGPQRSI 95

Query: 380 EGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENLEEAKKA 559
           EGWIILVTGVHEEAQEDDLQNAFGE+GEIKNLHLNLDRRTGFVKGYALIEYE  EEA+ A
Sbjct: 96  EGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNA 155

Query: 560 ITSMDGGELLTQIVNVDWA 616
           I +++G ELLTQ + VDWA
Sbjct: 156 IENLNGSELLTQTIYVDWA 174


>ref|XP_002314085.1| predicted protein [Populus trichocarpa] gi|222850493|gb|EEE88040.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score =  202 bits (514), Expect = 1e-49
 Identities = 101/140 (72%), Positives = 112/140 (80%), Gaps = 2/140 (1%)
 Frame = +2

Query: 203 PIPKLKXXXXXXXXXXXX-VPKKTKGRGFREETDAGRTNRMSGR-FDSLDSDGGPGPERS 376
           P+PKLK              PKKTKGRGFREE D  R +R SGR FDSL SDGGPGP+RS
Sbjct: 36  PLPKLKSAITGGSASPSLSAPKKTKGRGFREEVDTERQSRFSGRGFDSLGSDGGPGPQRS 95

Query: 377 IEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENLEEAKK 556
           +EGWIILV+GVHEEAQ+D LQ AFGEFGEIKNLHLNLDRRTGFVKGYALIEYEN E+A+ 
Sbjct: 96  VEGWIILVSGVHEEAQDDHLQEAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEQAEN 155

Query: 557 AITSMDGGELLTQIVNVDWA 616
           AI SM+GG LL Q++NVDWA
Sbjct: 156 AIASMNGGTLLEQVINVDWA 175


>gb|ABK96138.1| unknown [Populus trichocarpa]
          Length = 205

 Score =  202 bits (514), Expect = 1e-49
 Identities = 101/140 (72%), Positives = 112/140 (80%), Gaps = 2/140 (1%)
 Frame = +2

Query: 203 PIPKLKXXXXXXXXXXXX-VPKKTKGRGFREETDAGRTNRMSGR-FDSLDSDGGPGPERS 376
           P+PKLK              PKKTKGRGFREE D  R +R SGR FDSL SDGGPGP+RS
Sbjct: 36  PLPKLKSAITGGSASPSLSAPKKTKGRGFREEVDTERQSRFSGRGFDSLGSDGGPGPQRS 95

Query: 377 IEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENLEEAKK 556
           +EGWIILV+GVHEEAQ+D LQ AFGEFGEIKNLHLNLDRRTGFVKGYALIEYEN E+A+ 
Sbjct: 96  VEGWIILVSGVHEEAQDDHLQEAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEQAEN 155

Query: 557 AITSMDGGELLTQIVNVDWA 616
           AI SM+GG LL Q++NVDWA
Sbjct: 156 AIASMNGGTLLEQVINVDWA 175


Top