BLASTX nr result
ID: Atractylodes22_contig00004881
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00004881
(1074 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 226 1e-74
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 229 2e-74
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 224 5e-74
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 223 1e-73
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 224 2e-73
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 226 bits (577), Expect(2) = 1e-74
Identities = 112/209 (53%), Positives = 146/209 (69%), Gaps = 1/209 (0%)
Frame = -1
Query: 825 FLTIVDDFSRAVWIYLLKSKNEVFINVKDFCNLIKNQFGKSIKILRSDNGIEFVNHNMIE 646
FLTIVDD+SR VW+YL+ K+E ++KDF L++ QF IKI+RSDNG EF+ M E
Sbjct: 593 FLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLC--MRE 650
Query: 645 FVKDHGILHQTSCAYSPQQNGVVERKHRHLLNVARSLLFQGGIPLNMWTECILTAAYLIN 466
+ GI H+TSC +P QNG VERKHRH+LN+AR+L FQ +P+ W ECIL+AAYLIN
Sbjct: 651 YFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 710
Query: 465 RTLTLVLSGKCPYEKVYGFEPALSHLRNFGCLCFATKLNN-FDKFSSRSEKCVMLGYSNS 289
RT +++L GK PYE +Y P SHLR FG LC+A N+ DKF++RS +CV +GY +
Sbjct: 711 RTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHG 770
Query: 288 KKGYELFSLDSNKVIFSRDVKFYENVFPF 202
+KG+ LF L+ K SRDV F E FP+
Sbjct: 771 QKGWRLFDLEEQKFFVSRDVIFQETEFPY 799
Score = 80.9 bits (198), Expect(2) = 1e-74
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Frame = -3
Query: 1051 LWHSRLGHPADQALNVLRKKLNLENETLLP--CDICHKAKQTREPFPLSDHKSKCLGELV 878
LWH RLGH +D+ +N+L ++L + +L CD C +AKQTR+ FPLSD++S +L+
Sbjct: 515 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLI 574
Query: 877 HLDVWGPYKVTSRDEFRFF 821
H DVWGPY+ S R+F
Sbjct: 575 HCDVWGPYRAPSYSGARYF 593
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 229 bits (585), Expect(2) = 2e-74
Identities = 123/286 (43%), Positives = 173/286 (60%), Gaps = 22/286 (7%)
Frame = -1
Query: 825 FLTIVDDFSRAVWIYLLKSKNEVFINVKDFCNLIKNQFGKSIKILRSDNGIEFVNHNMIE 646
FLT+VD+++RAVW+YLL SK +++K+F +L++ QF IK +RSDNG EFV +
Sbjct: 547 FLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVERQFSTKIKTIRSDNGTEFVC--LSS 604
Query: 645 FVKDHGILHQTSCAYSPQQNGVVERKHRHLLNVARSLLFQGGIPLNMWTECILTAAYLIN 466
F DHGI+H+TSC +PQQNG VERKHRH+LNVAR+L FQ +P+ W+ C LTAAYLIN
Sbjct: 605 FFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLIN 664
Query: 465 RTLTLVLSGKCPYEKVYGFEPALSHLRNFGCLCFA-TKLNNFDKFSSRSEKCVMLGYSNS 289
RT T +L GK P+E +Y P ++H+R FGC+C+ + + DKF SRS K + LGY +
Sbjct: 665 RTPTPLLQGKTPFELLYNRPPPVNHIRVFGCICYVHNQKHGGDKFESRSNKSIFLGYPFA 724
Query: 288 KKGYELFSLDSNKVIFSRDVKFYENVFPFKMNTGSQGNPPNIGPSHL--NFF-------- 139
KKG+ +++ ++ + SRDV F E FPF + + PS+ +FF
Sbjct: 725 KKGWRVYNFETGVISVSRDVVFRETEFPFPASVFDSTPDSQLSPSNADQSFFLPSELQAP 784
Query: 138 -------DSYLFQSDDDTNLTSPN----DEDGDGIGEASESEIANS 34
L QS TNL N ++ + E S++E NS
Sbjct: 785 TPVSITTTLELTQSSSSTNLNDDNFRIPSDESSSVNEMSDNEDLNS 830
Score = 77.0 bits (188), Expect(2) = 2e-74
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
Frame = -3
Query: 1060 SKHLWHSRLGHPADQALNVLRKKLN----LENETLLPCDICHKAKQTREPFPLSDHKSKC 893
S LWH RLGHP+ + L +L + +++T C+IC KAKQTR+PFPLS++K+
Sbjct: 467 SSQLWHCRLGHPSSKVLKLLSFSDSTGHAFDSKT---CEICIKAKQTRDPFPLSNNKTSS 523
Query: 892 LGELVHLDVWGPYKVTS 842
E+VH D+WGPY+ TS
Sbjct: 524 PFEMVHCDLWGPYRTTS 540
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 224 bits (572), Expect(2) = 5e-74
Identities = 111/224 (49%), Positives = 156/224 (69%), Gaps = 1/224 (0%)
Frame = -1
Query: 825 FLTIVDDFSRAVWIYLLKSKNEVFINVKDFCNLIKNQFGKSIKILRSDNGIEFVNHNMIE 646
FLT+VDD+SRAVW+YLL SK E ++K+F L++ Q+ +IK++RSDNG EF+ + +
Sbjct: 583 FLTLVDDYSRAVWLYLLPSKQEAPKHLKNFIALVERQYTTNIKMIRSDNGSEFIC--LSD 640
Query: 645 FVKDHGILHQTSCAYSPQQNGVVERKHRHLLNVARSLLFQGGIPLNMWTECILTAAYLIN 466
F GI+H+TSC +PQQNG VERKHRH+LNVAR+L FQ G+P+ W+ C LTAAYLIN
Sbjct: 641 FFAQKGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQSGLPIEFWSYCALTAAYLIN 700
Query: 465 RTLTLVLSGKCPYEKVYGFEPALSHLRNFGCLCFATKL-NNFDKFSSRSEKCVMLGYSNS 289
RT T +L GK P+E +Y P L H+R FGC+C+ L + DKF+SRS K + LGY +
Sbjct: 701 RTPTPLLKGKTPFELIYNRPPPLQHIRIFGCICYVHNLKHGGDKFASRSNKSIFLGYPFA 760
Query: 288 KKGYELFSLDSNKVIFSRDVKFYENVFPFKMNTGSQGNPPNIGP 157
KKG+ ++++++ V SRDV F E F F ++ + P++ P
Sbjct: 761 KKGWRVYNIETGVVSVSRDVVFRETEFHFPISV--MDSSPSLDP 802
Score = 80.9 bits (198), Expect(2) = 5e-74
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Frame = -3
Query: 1060 SKHLWHSRLGHPADQALNVLR----KKLNLENETLLPCDICHKAKQTREPFPLSDHKSKC 893
S LWH RLGHP+ +AL++L +++T C+IC +AKQTR+PFPLS +K+
Sbjct: 503 SSQLWHQRLGHPSSKALHLLPFSDVTSSTFDSKT---CEICIQAKQTRDPFPLSSNKTSF 559
Query: 892 LGELVHLDVWGPYKVTSRDEFRFF 821
ELVH D+WGPY+ TS R+F
Sbjct: 560 AFELVHCDLWGPYRTTSICGSRYF 583
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 223 bits (568), Expect(2) = 1e-73
Identities = 111/209 (53%), Positives = 144/209 (68%), Gaps = 1/209 (0%)
Frame = -1
Query: 825 FLTIVDDFSRAVWIYLLKSKNEVFINVKDFCNLIKNQFGKSIKILRSDNGIEFVNHNMIE 646
FLTIVDD+SR VW+YL+ K+E ++KDF L++ QF IK +RSDNG EF+ M E
Sbjct: 369 FLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKTVRSDNGTEFLC--MRE 426
Query: 645 FVKDHGILHQTSCAYSPQQNGVVERKHRHLLNVARSLLFQGGIPLNMWTECILTAAYLIN 466
+ GI H+TSC +P QNG VERKHRH+LN+AR+L FQ +P+ W ECIL+AAYLIN
Sbjct: 427 YFLHKGITHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 486
Query: 465 RTLTLVLSGKCPYEKVYGFEPALSHLRNFGCLCFATKLNN-FDKFSSRSEKCVMLGYSNS 289
RT +++L GK PYE +Y P SHLR FG LC+A N+ DKF +RS +CV +GY +
Sbjct: 487 RTPSMLLQGKSPYEMLYKTAPNYSHLRVFGSLCYAHNQNHKGDKFVARSRRCVFVGYPHG 546
Query: 288 KKGYELFSLDSNKVIFSRDVKFYENVFPF 202
+KG+ LF L+ K SRDV F E FP+
Sbjct: 547 QKGWRLFDLEEQKFFVSRDVIFQETEFPY 575
Score = 80.9 bits (198), Expect(2) = 1e-73
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Frame = -3
Query: 1051 LWHSRLGHPADQALNVLRKKLNLENETLLP--CDICHKAKQTREPFPLSDHKSKCLGELV 878
LWH RLGH +D+ +N+L ++L + +L CD C +AKQTR+ FPLSD++S +L+
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLI 350
Query: 877 HLDVWGPYKVTSRDEFRFF 821
H DVWGPY+ S R+F
Sbjct: 351 HCDVWGPYRTPSYSGARYF 369
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 224 bits (572), Expect(2) = 2e-73
Identities = 111/209 (53%), Positives = 145/209 (69%), Gaps = 1/209 (0%)
Frame = -1
Query: 825 FLTIVDDFSRAVWIYLLKSKNEVFINVKDFCNLIKNQFGKSIKILRSDNGIEFVNHNMIE 646
FLTIVDD+SR VW+YL+ K+E ++KDF L++ QF IK +RSDNG EF+ M E
Sbjct: 369 FLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEIKTVRSDNGTEFLC--MRE 426
Query: 645 FVKDHGILHQTSCAYSPQQNGVVERKHRHLLNVARSLLFQGGIPLNMWTECILTAAYLIN 466
+ GI H+TSC +P QNG VERKHRH+LN+AR+L FQ +P+ W ECIL+AAYLIN
Sbjct: 427 YFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 486
Query: 465 RTLTLVLSGKCPYEKVYGFEPALSHLRNFGCLCFATKLNN-FDKFSSRSEKCVMLGYSNS 289
RT +++L GK PYE +Y P SHLR FG LC+A N+ DKF++RS +CV +GY +
Sbjct: 487 RTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHG 546
Query: 288 KKGYELFSLDSNKVIFSRDVKFYENVFPF 202
+KG+ LF L+ K SRDV F E FP+
Sbjct: 547 QKGWRLFDLEEQKFFVSRDVIFQETEFPY 575
Score = 79.0 bits (193), Expect(2) = 2e-73
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = -3
Query: 1051 LWHSRLGHPADQALNVLRKKLNLENETLLP--CDICHKAKQTREPFPLSDHKSKCLGELV 878
LWH RLGH +D+ +N+L ++L + +L CD C +AKQTR+ FPL D++S +L+
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQLI 350
Query: 877 HLDVWGPYKVTSRDEFRFF 821
H DVWGPY+ S R+F
Sbjct: 351 HCDVWGPYRTPSYSGARYF 369