BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00004839
         (1179 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 is...   562   e-158
emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]   560   e-157
ref|XP_002520330.1| replication factor C / DNA polymerase III ga...   543   e-152
ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [V...   541   e-151
gb|AFK40832.1| unknown [Lotus japonicus]                              539   e-151

>ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera]
            gi|302141781|emb|CBI18984.3| unnamed protein product
            [Vitis vinifera]
          Length = 341

 Score =  562 bits (1448), Expect = e-158
 Identities = 287/341 (84%), Positives = 304/341 (89%), Gaps = 1/341 (0%)
 Frame = -2

Query: 1136 MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 957
            MAP+LQSSQPWVEKYRP++VKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 956  AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGH-QGGYPCPPFKIII 780
            AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK+FAAVAVGSGH QGGYPCPP+KIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120

Query: 779  LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 600
            LDEADSMTEDAQNALRRTMETYS+VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 599  TRILHICKEEGLNLDSEALSTLGSISQGDLRRAITFLQGAARLFGXXXXXXXXXXXSGVI 420
            +RILHICKEE LNLDSEALSTL SISQGDLRRAIT+LQGAARLFG           SGV+
Sbjct: 181  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240

Query: 419  PHEVVQALLAACKSGSFDSANKEVNNAIAEGYPVSQMLSQLFDMXXXXXXXXXEQKARIC 240
            P  VVQAL AACKSG FDSANKEVNN IAEGYPVSQML QLFD+         EQKARIC
Sbjct: 241  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDV-VVEADISDEQKARIC 299

Query: 239  RKLGESDKCLVDGADEYLQLLDACSSMIKAFCNMPEGFSSE 117
            ++L E+DKCLVDGADEYLQLLD  S+ ++A CNMPE F  E
Sbjct: 300  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340


>emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
          Length = 341

 Score =  560 bits (1443), Expect = e-157
 Identities = 286/341 (83%), Positives = 303/341 (88%), Gaps = 1/341 (0%)
 Frame = -2

Query: 1136 MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 957
            MAP+LQSSQPWVEKYRP++VKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 956  AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGH-QGGYPCPPFKIII 780
            AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK+FA VAVGSGH QGGYPCPP+KIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120

Query: 779  LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 600
            LDEADSMTEDAQNALRRTMETYS+VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 599  TRILHICKEEGLNLDSEALSTLGSISQGDLRRAITFLQGAARLFGXXXXXXXXXXXSGVI 420
            +RILHICKEE LNLDSEALSTL SISQGDLRRAIT+LQGAARLFG           SGV+
Sbjct: 181  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240

Query: 419  PHEVVQALLAACKSGSFDSANKEVNNAIAEGYPVSQMLSQLFDMXXXXXXXXXEQKARIC 240
            P  VVQAL AACKSG FDSANKEVNN IAEGYPVSQML QLFD+         EQKARIC
Sbjct: 241  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDV-VVEADISDEQKARIC 299

Query: 239  RKLGESDKCLVDGADEYLQLLDACSSMIKAFCNMPEGFSSE 117
            ++L E+DKCLVDGADEYLQLLD  S+ ++A CNMPE F  E
Sbjct: 300  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340


>ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540549|gb|EEF42116.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 342

 Score =  543 bits (1399), Expect = e-152
 Identities = 272/341 (79%), Positives = 299/341 (87%), Gaps = 1/341 (0%)
 Frame = -2

Query: 1136 MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 957
            MAP+LQSSQPWVEKYRP++VKDVAHQ+EVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60

Query: 956  AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGHQ-GGYPCPPFKIII 780
            AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSG + GGYPCPP+KIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120

Query: 779  LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 600
            LDEADSMTEDAQNALRRTMETYS+VTRFFF+CNYISRIIEPLASRCAKFRFKPLSEEIMS
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 599  TRILHICKEEGLNLDSEALSTLGSISQGDLRRAITFLQGAARLFGXXXXXXXXXXXSGVI 420
            +R+LHIC+EEGLNLD+EALSTL  +SQGDLRRAIT+LQGAARL+G           SGVI
Sbjct: 181  SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240

Query: 419  PHEVVQALLAACKSGSFDSANKEVNNAIAEGYPVSQMLSQLFDMXXXXXXXXXEQKARIC 240
            P E V AL AAC+SG FD ANKEVNN IAEGYPVSQML QL ++         EQKA+IC
Sbjct: 241  PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQIC 300

Query: 239  RKLGESDKCLVDGADEYLQLLDACSSMIKAFCNMPEGFSSE 117
            + LG +DKCLVDGADEYLQLLD  S+ ++A CNMP+ F  E
Sbjct: 301  KSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPYE 341


>ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
          Length = 334

 Score =  541 bits (1393), Expect = e-151
 Identities = 280/341 (82%), Positives = 297/341 (87%), Gaps = 1/341 (0%)
 Frame = -2

Query: 1136 MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 957
            MAP+LQSSQPWVEKYRP++VKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 956  AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGH-QGGYPCPPFKIII 780
            AIAHQL+G       VLELNASDDRGINVVRTKIK+FAAVAVGSGH QGGYPCPP+KIII
Sbjct: 61   AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113

Query: 779  LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 600
            LDEADSMTEDAQNALRRTMETYS+VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
Sbjct: 114  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173

Query: 599  TRILHICKEEGLNLDSEALSTLGSISQGDLRRAITFLQGAARLFGXXXXXXXXXXXSGVI 420
            +RILHICKEE LNLDSEALSTL SISQGDLRRAIT+LQGAARLFG           SGV+
Sbjct: 174  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 233

Query: 419  PHEVVQALLAACKSGSFDSANKEVNNAIAEGYPVSQMLSQLFDMXXXXXXXXXEQKARIC 240
            P  VVQAL AACKSG FDSANKEVNN IAEGYPVSQML QLFD+         EQKARIC
Sbjct: 234  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDV-VVEADISDEQKARIC 292

Query: 239  RKLGESDKCLVDGADEYLQLLDACSSMIKAFCNMPEGFSSE 117
            ++L E+DKCLVDGADEYLQLLD  S+ ++A CNMPE F  E
Sbjct: 293  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 333


>gb|AFK40832.1| unknown [Lotus japonicus]
          Length = 342

 Score =  539 bits (1389), Expect = e-151
 Identities = 270/341 (79%), Positives = 300/341 (87%), Gaps = 1/341 (0%)
 Frame = -2

Query: 1136 MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 957
            MAP++QSSQPWVEKYRP++VKDVA+QDEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60

Query: 956  AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSG-HQGGYPCPPFKIII 780
            AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK+FAAVAVG+   +GGYPCPP+KII+
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120

Query: 779  LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 600
            LDEADSMTEDAQNALRRTMETYS+VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 599  TRILHICKEEGLNLDSEALSTLGSISQGDLRRAITFLQGAARLFGXXXXXXXXXXXSGVI 420
            +RIL+IC EEGL+LD+E LSTL SISQGDLRRAIT+LQ +ARLFG           SGV+
Sbjct: 181  SRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVV 240

Query: 419  PHEVVQALLAACKSGSFDSANKEVNNAIAEGYPVSQMLSQLFDMXXXXXXXXXEQKARIC 240
            P  VV+A+L ACKSG+FD ANKEVNN IAEGYP SQ+L+QLFD          +QKARIC
Sbjct: 241  PENVVEAILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARIC 300

Query: 239  RKLGESDKCLVDGADEYLQLLDACSSMIKAFCNMPEGFSSE 117
            +KLGE+DKCLVDGADEYLQLLD  S+  KAFC+MPEG S E
Sbjct: 301  KKLGEADKCLVDGADEYLQLLDVISNTTKAFCDMPEGLSYE 341