BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00003068
         (1143 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   246   6e-63
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   246   1e-62
ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2...   241   2e-61
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   238   3e-60
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   234   4e-59

>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
            Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
            29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  246 bits (629), Expect = 6e-63
 Identities = 133/200 (66%), Positives = 150/200 (75%), Gaps = 2/200 (1%)
 Frame = -3

Query: 1012 SSRIIRNVAVXXXXXXXXXXXXXXXXXXXQNFSPDLKVYVGNLPFSVDSAALAGLFEEAG 833
            SSR +R V +                   +NFSPDLK++VGNLPFS DSAALA LFE AG
Sbjct: 52   SSRFVRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAG 111

Query: 832  NVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQKFDGYELDGRSLRVKSGPPP-RREE 656
            NVEMVEVIYDK++GRSRGFGFVTM+S EEV+ A Q+F+GYELDGR+LRV SGPPP +RE 
Sbjct: 112  NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN 171

Query: 655  SSF-GAPREXXXXXXXXXRSFDNTNRVYVGNLAWSVDNLALETLFREQGNVMDAKVVYDR 479
            SSF G  R           SFD++NRVYVGNLAW VD  ALETLF EQG V+DAKVVYDR
Sbjct: 172  SSFRGGSR--------GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223

Query: 478  ESGRSRGFGFVTYSSAEEVN 419
            +SGRSRGFGFVTYSSAEEVN
Sbjct: 224  DSGRSRGFGFVTYSSAEEVN 243



 Score = 90.5 bits (223), Expect = 7e-16
 Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
 Frame = -3

Query: 922 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 743
           +F    +VYVGNL + VD  AL  LF E G V   +V+YD+ SGRSRGFGFVT +S EEV
Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEV 242

Query: 742 QEAVQKFDGYELDGRSLRVK--SGPPPRRE 659
             A++  DG +L+GR++RV      PPRR+
Sbjct: 243 NNAIESLDGVDLNGRAIRVSPAEARPPRRQ 272


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
            Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
            RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  246 bits (627), Expect = 1e-62
 Identities = 131/213 (61%), Positives = 152/213 (71%), Gaps = 4/213 (1%)
 Frame = -3

Query: 1045 PTSSKLFEATPSS----RIIRNVAVXXXXXXXXXXXXXXXXXXXQNFSPDLKVYVGNLPF 878
            P+S  L  ++PSS    R +R V +                   +NFSPDLK++VGNL F
Sbjct: 37   PSSLNLSLSSPSSCFSSRFVRKVTLPDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLF 96

Query: 877  SVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQKFDGYELDGR 698
            S DSAALA LFE AGNVEMVEVIYDK++GRSRGFGFVTM+S EEV+ A Q+F+GYELDGR
Sbjct: 97   SADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGR 156

Query: 697  SLRVKSGPPPRREESSFGAPREXXXXXXXXXRSFDNTNRVYVGNLAWSVDNLALETLFRE 518
            +LRV SGPPP + E+S                SFD++NRVYVGNLAW VD  ALETLF E
Sbjct: 157  ALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSE 216

Query: 517  QGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVN 419
            QG V+DAKVVYDR+SGRSRGFGFVTYSSAEEVN
Sbjct: 217  QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249



 Score = 90.5 bits (223), Expect = 7e-16
 Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
 Frame = -3

Query: 922 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 743
           +F    +VYVGNL + VD  AL  LF E G V   +V+YD+ SGRSRGFGFVT +S EEV
Sbjct: 189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEV 248

Query: 742 QEAVQKFDGYELDGRSLRVK--SGPPPRRE 659
             A++  DG +L+GR++RV      PPRR+
Sbjct: 249 NNAIESLDGVDLNGRAIRVSPAEARPPRRQ 278


>ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  241 bits (615), Expect = 2e-61
 Identities = 126/198 (63%), Positives = 151/198 (76%)
 Frame = -3

Query: 1012 SSRIIRNVAVXXXXXXXXXXXXXXXXXXXQNFSPDLKVYVGNLPFSVDSAALAGLFEEAG 833
            SSR ++NVA+                    +FS DLK++VGNLPF+VDSA LAGLFE AG
Sbjct: 58   SSRFLKNVAISSEFGQEEDFLSDGDEQ---SFSQDLKLFVGNLPFNVDSARLAGLFETAG 114

Query: 832  NVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQKFDGYELDGRSLRVKSGPPPRREES 653
            NVEMVEVIYDK++GRSRGFGFVTM ++EEV+ A ++F+GYELDGR+LRV  GPPP++E S
Sbjct: 115  NVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESS 174

Query: 652  SFGAPREXXXXXXXXXRSFDNTNRVYVGNLAWSVDNLALETLFREQGNVMDAKVVYDRES 473
                PR           +FD+ NRVYVGNL+W+VDNLALETLFRE+G VMDAKVVYDR+S
Sbjct: 175  FSRGPR--------GGETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDS 226

Query: 472  GRSRGFGFVTYSSAEEVN 419
            GRSRGFGFVTYSSAEEV+
Sbjct: 227  GRSRGFGFVTYSSAEEVD 244



 Score = 88.2 bits (217), Expect = 3e-15
 Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
 Frame = -3

Query: 919 FSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQ 740
           F    +VYVGNL ++VD+ AL  LF E G V   +V+YD+ SGRSRGFGFVT +S EEV 
Sbjct: 185 FDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVD 244

Query: 739 EAVQKFDGYELDGRSLRVK-SGPPPRRE 659
            A+   +G ELDGR++RV  +   PRR+
Sbjct: 245 NAIDSLNGAELDGRAIRVSVAEAKPRRQ 272


>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
            vinifera]
          Length = 288

 Score =  238 bits (606), Expect = 3e-60
 Identities = 126/207 (60%), Positives = 152/207 (73%), Gaps = 7/207 (3%)
 Frame = -3

Query: 1018 TPSSRIIRNVAVXXXXXXXXXXXXXXXXXXXQNFSPDLKVYVGNLPFSVDSAALAGLFEE 839
            T SSR +RNVAV                    +FSPDLK++VGNLPF+VDSA LAGLFE+
Sbjct: 56   TLSSRFVRNVAVSSDYEQDEDVLSDEGEP---SFSPDLKLFVGNLPFNVDSAGLAGLFEQ 112

Query: 838  AGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQKFDGYELDGRSLRVKSGPPP-RR 662
            AGNVEMVEVIYDKI+GRSRGFGFVTM+++EEV+ A Q+F+GYEL+GR LRV SGPPP RR
Sbjct: 113  AGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARR 172

Query: 661  EESSFGAP------REXXXXXXXXXRSFDNTNRVYVGNLAWSVDNLALETLFREQGNVMD 500
            E S+F                     + ++TNR+YVGNL+W VD+LALETLF EQG V +
Sbjct: 173  ENSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTE 232

Query: 499  AKVVYDRESGRSRGFGFVTYSSAEEVN 419
            A+V+YDRE+GRSRGFGFVTY+SAEEVN
Sbjct: 233  ARVIYDRETGRSRGFGFVTYNSAEEVN 259



 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 922 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 743
           N +   ++YVGNL + VD  AL  LF E G V    VIYD+ +GRSRGFGFVT  S EEV
Sbjct: 199 NLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEV 258

Query: 742 QEAVQKFDGYELDGRSLRVKSGPP-PRRE 659
             A++  DG +L+GRS+RV      PRR+
Sbjct: 259 NRAIESLDGVDLNGRSIRVTMAEARPRRQ 287


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223541388|gb|EEF42939.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  234 bits (596), Expect = 4e-59
 Identities = 119/167 (71%), Positives = 140/167 (83%)
 Frame = -3

Query: 922 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 743
           +FS DLK++VGNLPF+VDSA LAGLFE AGNVEMVEVIYDK++GRSRGFGFVTM+S++EV
Sbjct: 87  SFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEV 146

Query: 742 QEAVQKFDGYELDGRSLRVKSGPPPRREESSFGAPREXXXXXXXXXRSFDNTNRVYVGNL 563
           + A Q+F+GYEL+GR+LRV SGPPP+RE S   +PR           S +  NR+YVGNL
Sbjct: 147 EAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPR--FGGGGGGGESLEG-NRLYVGNL 203

Query: 562 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEV 422
           +WSVDNLALE+ F EQG V+DAKVVYDRESGRSRGFGFVTYSSAEEV
Sbjct: 204 SWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEV 250



 Score = 87.4 bits (215), Expect = 6e-15
 Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = -3

Query: 904 KVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQK 725
           ++YVGNL +SVD+ AL   F E G V   +V+YD+ SGRSRGFGFVT +S EEV+ A+  
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256

Query: 724 FDGYELDGRSLRVK-SGPPPRRE 659
            +G ELDGR++RV  +   PRR+
Sbjct: 257 LNGAELDGRAIRVSVAEARPRRQ 279