BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00000782
         (3568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1389   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1358   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...  1354   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1352   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1323   0.0  

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1389 bits (3595), Expect = 0.0
 Identities = 698/1016 (68%), Positives = 802/1016 (78%), Gaps = 9/1016 (0%)
 Frame = -3

Query: 3317 KPTKVFRLNSSKKSKVMWRNIXXXXXXXXXXXXXXXXXSFRCNLSSFWGYSGNPLLSEKL 3138
            KPT  FR N  KK  VMWRNI                        SF G+S + +  E +
Sbjct: 25   KPTN-FRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIM 83

Query: 3137 AFRPME-FDCSSSMKGYPERNCFEMGQNLARDGRIG------VGNHFGFNELCAKRYXXX 2979
             F   E   CSSS  G+ E     +G+  +R+  +G      + N  GF+  C K Y   
Sbjct: 84   KFGTFEPSSCSSS--GFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASV 141

Query: 2978 XXXXXXXSTDADEEAGGGDEVQKLLTEMGKQERRQATRGWWWQKRAKTG-GNWNYMKLKR 2802
                    TD +E+    DE+Q+LL EM K+E+RQ       + + + G     Y++L+R
Sbjct: 142  AEAVSS--TDVEEDVSASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRR 199

Query: 2801 RQVKIETEAWEQAAKEYKELLSDMCEQKLAPNLPYMKSLFLGWFEPLCKKIAQDQELCRQ 2622
            RQVKIETEAWE AAKEYKELL DMCEQKLAPNLPYMKSLFLGWFEPL   I ++QELCR 
Sbjct: 200  RQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRL 259

Query: 2621 GKHKAAYAPYFDLLPADKMAVITMHKIMALIMTGGENGCARVVSASCSVGEAIEQEIRIH 2442
            GK+KAAYAPYFD LPAD M+VITMHK++ L+MTGGE+G  RVV A+C +G+AIEQE+RIH
Sbjct: 260  GKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIH 319

Query: 2441 KFLENXXXXXXXXXXKREEKVPDIVIKDQEGLHKKVTNLMKKQKLQAVGRIVKGHDDSKP 2262
             FLE             E    D VI +QE L KKVTNLMKKQKL A  +IVKGHD+SKP
Sbjct: 320  NFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKP 379

Query: 2261 WTQPVKAQVGSRLFELLLQSAYIQPPVD-QSGDMLPDIRPAFVHTFRTSRKEGQKTGRRY 2085
            W    KA+VGSRL ELL+Q+AYIQPPVD Q  D  PDIRPAFVHTF+T  +E +K GRR+
Sbjct: 380  WGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRF 439

Query: 2084 GVIECDPLVRKGLERASRHVVIPYMPMLIPPVRWTGYDKGAYLFLPSFIMRIHGAKQQRE 1905
            GVIECDPLV+KGLER +RH+VIPY+PML+PP++WTGYDKGA+LFLPS++MR HGA+QQRE
Sbjct: 440  GVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQRE 499

Query: 1904 VLKRTPKENLQPVFEALDTLGNTKWRVNKRVLAVVDRIWSTGGRLAGLVDRDDIPLPEKP 1725
             +KR P+  L+PVFEAL+TLGNTKWR+NKR+  VVDRIW+ GG LA LVDR+D+PLPEKP
Sbjct: 500  AVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKP 559

Query: 1724 DTEDEEELNQXXXXXXXXXXXXXXRHSQRCDIELKLTVARKLRDEAGFFYPHNLDFRGRA 1545
            DTEDE +L +              RHSQRCDIELKL VARK++DE GFFYPHNLDFRGRA
Sbjct: 560  DTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRA 619

Query: 1544 YPMHPHLNHLGSDMCRGILEFAEGRPIGSSGLRWLKIHLANLFAGGVDKLSLEGRIAFTE 1365
            YPMHP+LNHLGSD+CRGILEFAEGRP+GSSGL WLKIHLANLFAGGVDKLS EGRI FTE
Sbjct: 620  YPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTE 679

Query: 1364 SHLHDIFDSADRPLDGERWWLNAEDPFQCLAVCIHLAEALRSRSPEATISHIPVHQDGSC 1185
            +HL DIFDSADRPL+G+RWWLNAEDPFQ LA CI+L+EALRS SPE TISHIPVHQDGSC
Sbjct: 680  NHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSC 739

Query: 1184 NGLQHYAALGRDKIGAAAVNLVEGERPADVYSGIAARVLDIVKRDAQLDPASYPEAKHAR 1005
            NGLQHYAALGRD++GA AVNLV GE+PADVYSGIAARVLDI+KRDA+ DPA +P+A  AR
Sbjct: 740  NGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRAR 799

Query: 1004 LLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLRERNNIADDAQLFGAACYAAKITLA 825
            +LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ERN IADD +LFGAACYAAKITL 
Sbjct: 800  ILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLT 859

Query: 824  ALGEMFEGARSIMNWLGDCAKLIASENQPVRWTTPLGLPVVQPYRIYGKHRVSTSLQVLT 645
            ALGEMF+ ARSIM+WLGDCAK+IASENQPVRWTTPLGLPVVQPYR  G+H + TSLQVLT
Sbjct: 860  ALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLT 919

Query: 644  LQRETEKVMVSRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDE 465
            LQRETE +MV RQRTAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVDE
Sbjct: 920  LQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDE 979

Query: 464  MNKILREKFVELYQAPVLENLLESFQQSFPTLSFPTLPDRGDFDLSDVLQSSYFFN 297
            MN++LREKFV+LY+ P+LENLLESFQQSFP L FP LP+RGDFDL +VL+S YFFN
Sbjct: 980  MNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1358 bits (3516), Expect = 0.0
 Identities = 680/1012 (67%), Positives = 796/1012 (78%), Gaps = 5/1012 (0%)
 Frame = -3

Query: 3317 KPTKVFRLNSSKKSKVMWRNIXXXXXXXXXXXXXXXXXSFRCNLSSFWGYSGNPLLSEKL 3138
            KPT +  +N    S +MWRNI                   +    SF G+  + +  +  
Sbjct: 20   KPTGL-DINPYHNSPIMWRNIIKQLSSRTPQKLLFSS---KNRTYSFLGFGQDSIFKDNT 75

Query: 3137 AFRPM-EFDCSSSMKGYPERNCFEMGQNLARD---GRIGVGNHFGFNELCAKRYXXXXXX 2970
             FR +    CS+ + G+       +G+ L  D    R  + N    N  C K Y      
Sbjct: 76   KFRSLIPISCSNIVMGFQN-----LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEA 130

Query: 2969 XXXXSTDADEEAGGGDEVQKLLTEMGKQERRQATRGWWWQKRAKTG-GNWNYMKLKRRQV 2793
                STDA+E+    DEV +LLTE+ K+E++Q       Q+   +G G+  Y  LKRRQV
Sbjct: 131  VAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQV 190

Query: 2792 KIETEAWEQAAKEYKELLSDMCEQKLAPNLPYMKSLFLGWFEPLCKKIAQDQELCRQGKH 2613
            K+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPL  KIA++QELC QGK 
Sbjct: 191  KVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKS 250

Query: 2612 KAAYAPYFDLLPADKMAVITMHKIMALIMTGGENGCARVVSASCSVGEAIEQEIRIHKFL 2433
            KAAYA YF  LPAD MAVITMHK+M L+MTGG++G ARVV A+  +G+AIEQE+RIH FL
Sbjct: 251  KAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFL 310

Query: 2432 ENXXXXXXXXXXKREEKVPDIVIKDQEGLHKKVTNLMKKQKLQAVGRIVKGHDDSKPWTQ 2253
            E           ++E+   + V ++QE L KKVTNLMKKQKL+AVG+IV+  DDSKPW Q
Sbjct: 311  EKTKKQKAEKDKQKEDG--EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQ 368

Query: 2252 PVKAQVGSRLFELLLQSAYIQPPVDQSGDMLPDIRPAFVHTFRTSRKEGQKTGRRYGVIE 2073
              +A+VGSRL +LLLQ+AYIQPP +Q     PDIRPAFVH+ RT  KE +   RRYG+I+
Sbjct: 369  DARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQ 428

Query: 2072 CDPLVRKGLERASRHVVIPYMPMLIPPVRWTGYDKGAYLFLPSFIMRIHGAKQQREVLKR 1893
            CD LV KGLER +RH+VIPYMPML+PPV+WTGYDKG +L+LPS++MR HGA+QQRE +KR
Sbjct: 429  CDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKR 488

Query: 1892 TPKENLQPVFEALDTLGNTKWRVNKRVLAVVDRIWSTGGRLAGLVDRDDIPLPEKPDTED 1713
              +  LQPVFEALDTLGNTKWR+NKRVL+VVDRIW+ GGRLA LVDRDD PLPE+PDTED
Sbjct: 489  ASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTED 548

Query: 1712 EEELNQXXXXXXXXXXXXXXRHSQRCDIELKLTVARKLRDEAGFFYPHNLDFRGRAYPMH 1533
            E    +              RHSQRCDIELKL VARK++DE  FFYPHN+DFRGRAYPMH
Sbjct: 549  EALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMH 608

Query: 1532 PHLNHLGSDMCRGILEFAEGRPIGSSGLRWLKIHLANLFAGGVDKLSLEGRIAFTESHLH 1353
            PHLNHLGSD+CRG+LEFAEGRP+G SGLRWLKIHLANLFAGGV+KLSLEGRI FTE+H+ 
Sbjct: 609  PHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMD 668

Query: 1352 DIFDSADRPLDGERWWLNAEDPFQCLAVCIHLAEALRSRSPEATISHIPVHQDGSCNGLQ 1173
            DIFDS+D+PL+G RWWLNAEDPFQCLAVCI+L+EA+RS SPE ++SHIPVHQDGSCNGLQ
Sbjct: 669  DIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQ 728

Query: 1172 HYAALGRDKIGAAAVNLVEGERPADVYSGIAARVLDIVKRDAQLDPASYPEAKHARLLIN 993
            HYAALGRDK+GAAAVNLV GE+PADVYSGIAARVLDI+KRDAQ DPA +P+A  AR+L+N
Sbjct: 729  HYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVN 788

Query: 992  QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLRERNNIADDAQLFGAACYAAKITLAALGE 813
            QVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ER  IADD++LFGAACYAAK+TL ALGE
Sbjct: 789  QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGE 848

Query: 812  MFEGARSIMNWLGDCAKLIASENQPVRWTTPLGLPVVQPYRIYGKHRVSTSLQVLTLQRE 633
            MFE ARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPYR  G+H + TSLQ+LTLQRE
Sbjct: 849  MFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRE 908

Query: 632  TEKVMVSRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNKI 453
            TEKVMV RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGVHDSYWTHACDVD++N+I
Sbjct: 909  TEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRI 968

Query: 452  LREKFVELYQAPVLENLLESFQQSFPTLSFPTLPDRGDFDLSDVLQSSYFFN 297
            LREKFVELY+AP+LE LLESFQ S+PTL FP LP+RGDFD+ DVL+S YFFN
Sbjct: 969  LREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1354 bits (3505), Expect = 0.0
 Identities = 678/1012 (66%), Positives = 795/1012 (78%), Gaps = 5/1012 (0%)
 Frame = -3

Query: 3317 KPTKVFRLNSSKKSKVMWRNIXXXXXXXXXXXXXXXXXSFRCNLSSFWGYSGNPLLSEKL 3138
            KPT +  +N    S +MWRNI                   +    SF G+  + +  +  
Sbjct: 20   KPTGL-DINPYHNSPIMWRNIIKQLSSRTPQKLLFSS---KNRTYSFLGFGQDSIFKDNT 75

Query: 3137 AFRPM-EFDCSSSMKGYPERNCFEMGQNLARD---GRIGVGNHFGFNELCAKRYXXXXXX 2970
             FR +    CS+ + G+       +G+ L  D    R  + N    N  C K Y      
Sbjct: 76   KFRSLIPISCSNIVMGFQN-----LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEA 130

Query: 2969 XXXXSTDADEEAGGGDEVQKLLTEMGKQERRQATRGWWWQKRAKTG-GNWNYMKLKRRQV 2793
                STDA+E+    DEV +LLTE+ K+E++Q       Q+   +G G+  Y  LKRRQV
Sbjct: 131  VAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQV 190

Query: 2792 KIETEAWEQAAKEYKELLSDMCEQKLAPNLPYMKSLFLGWFEPLCKKIAQDQELCRQGKH 2613
            K+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPL  KIA++QELC QGK 
Sbjct: 191  KVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKS 250

Query: 2612 KAAYAPYFDLLPADKMAVITMHKIMALIMTGGENGCARVVSASCSVGEAIEQEIRIHKFL 2433
            KAAYA YF  LPAD MAVITMHK+M L+MTGG++G ARVV A+  +G+AIEQE+RIH FL
Sbjct: 251  KAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFL 310

Query: 2432 ENXXXXXXXXXXKREEKVPDIVIKDQEGLHKKVTNLMKKQKLQAVGRIVKGHDDSKPWTQ 2253
            E           ++E+   + V ++QE L KKVTNLMKKQKL+AVG+IV+  DDSKPW Q
Sbjct: 311  EKTKKQKAEKDKQKEDG--EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQ 368

Query: 2252 PVKAQVGSRLFELLLQSAYIQPPVDQSGDMLPDIRPAFVHTFRTSRKEGQKTGRRYGVIE 2073
              +A+VGSRL +LLLQ+AYIQPP +Q     PDI PAFVH+ RT  KE +   RRYG+I+
Sbjct: 369  DARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQ 428

Query: 2072 CDPLVRKGLERASRHVVIPYMPMLIPPVRWTGYDKGAYLFLPSFIMRIHGAKQQREVLKR 1893
            CD LV KGLER +RH+VIPYMPML+PPV+WTGYDKG +L+LPS++MR HGA+QQRE +KR
Sbjct: 429  CDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKR 488

Query: 1892 TPKENLQPVFEALDTLGNTKWRVNKRVLAVVDRIWSTGGRLAGLVDRDDIPLPEKPDTED 1713
              +  LQPVFEALDTLGNTKWR+NKRVL+VVDRIW+ GGRLA LVDRDD PLPE+PDTED
Sbjct: 489  ASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTED 548

Query: 1712 EEELNQXXXXXXXXXXXXXXRHSQRCDIELKLTVARKLRDEAGFFYPHNLDFRGRAYPMH 1533
            E  L +              RHSQRCDIELKL VARK++DE  FFYPHN+DFRGRAYPMH
Sbjct: 549  EALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMH 608

Query: 1532 PHLNHLGSDMCRGILEFAEGRPIGSSGLRWLKIHLANLFAGGVDKLSLEGRIAFTESHLH 1353
            PHLNHLGSD+CRG+LEFAEGRP+G SGLRWLKIHLANLFAGGV+KLSLEGRI FTE+H+ 
Sbjct: 609  PHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMD 668

Query: 1352 DIFDSADRPLDGERWWLNAEDPFQCLAVCIHLAEALRSRSPEATISHIPVHQDGSCNGLQ 1173
            DIFDS+D+PL+G RWWLNAEDPFQCLAVCI+L+EA+RS SPE ++SHIPVHQDGSCNGLQ
Sbjct: 669  DIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQ 728

Query: 1172 HYAALGRDKIGAAAVNLVEGERPADVYSGIAARVLDIVKRDAQLDPASYPEAKHARLLIN 993
            HYAALGRDK+GAAAVNLV GE+PA+ YSGIAARVLDI+KRDAQ DPA +P+A  AR+L+N
Sbjct: 729  HYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVN 788

Query: 992  QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLRERNNIADDAQLFGAACYAAKITLAALGE 813
            QVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ER  IADD++LFGAACYAAK+TL ALGE
Sbjct: 789  QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGE 848

Query: 812  MFEGARSIMNWLGDCAKLIASENQPVRWTTPLGLPVVQPYRIYGKHRVSTSLQVLTLQRE 633
            MFE ARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPYR  G+H + TSLQ+LTLQRE
Sbjct: 849  MFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRE 908

Query: 632  TEKVMVSRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNKI 453
            TEKVMV RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGVHDSYWTHACDVD++N+I
Sbjct: 909  TEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRI 968

Query: 452  LREKFVELYQAPVLENLLESFQQSFPTLSFPTLPDRGDFDLSDVLQSSYFFN 297
            LREKFVELY+AP+LE LLESFQ S+PTL FP LP+RGDFD+ DVL+S YFFN
Sbjct: 969  LREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 1352 bits (3500), Expect = 0.0
 Identities = 679/1013 (67%), Positives = 797/1013 (78%), Gaps = 6/1013 (0%)
 Frame = -3

Query: 3317 KPTKVFRLNSSKKSKVMWRNIXXXXXXXXXXXXXXXXXSFRCNLSSFWGYSGNPLLSEKL 3138
            KPT +  +N    S +MWRNI                   +    SF G+  + +  +  
Sbjct: 20   KPTGL-DINRYHNSPIMWRNIIKQLSSRTPQKLLFSS---KNRTYSFLGFGQDSVFKDNT 75

Query: 3137 AFRPM-EFDCSSSMKGYPERNCFEMGQNLARD---GRIGVGNHFGFNELCAKR-YXXXXX 2973
             FR +    CS+ + G+       +G+ L  D    R  + N    N+ C ++ Y     
Sbjct: 76   KFRSLIPISCSNIVMGFQN-----LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAE 130

Query: 2972 XXXXXSTDADEEAGGGDEVQKLLTEMGKQERRQATRGWWWQKRAKTG-GNWNYMKLKRRQ 2796
                 STDA+E+    DEVQ+LLTE+ K+E++Q       Q+   +G G+  Y  LKRRQ
Sbjct: 131  AVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQ 190

Query: 2795 VKIETEAWEQAAKEYKELLSDMCEQKLAPNLPYMKSLFLGWFEPLCKKIAQDQELCRQGK 2616
            VK+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPL  KIA++QELC QGK
Sbjct: 191  VKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGK 250

Query: 2615 HKAAYAPYFDLLPADKMAVITMHKIMALIMTGGENGCARVVSASCSVGEAIEQEIRIHKF 2436
             KAAYA Y   LPAD MAVITMHK+M L+MTGG++G ARVV A+  +G+AIEQE+RIH F
Sbjct: 251  SKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNF 310

Query: 2435 LENXXXXXXXXXXKREEKVPDIVIKDQEGLHKKVTNLMKKQKLQAVGRIVKGHDDSKPWT 2256
            LE           ++E+   + V ++QE L KKVTNLMKKQKL+AVG+IV+  DDSKPW 
Sbjct: 311  LEKTKKQKAEKDKQKEDG--EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWG 368

Query: 2255 QPVKAQVGSRLFELLLQSAYIQPPVDQSGDMLPDIRPAFVHTFRTSRKEGQKTGRRYGVI 2076
            Q  KA+VGSRL ELLLQ+AYIQPP +Q     PDIRPAF+H+ RT  KE +   RRYG+I
Sbjct: 369  QDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGII 428

Query: 2075 ECDPLVRKGLERASRHVVIPYMPMLIPPVRWTGYDKGAYLFLPSFIMRIHGAKQQREVLK 1896
            +CD LV KGLER +RH+VIPYMPML+PPV+WTGYDKG +L+LPS++MR HGA+QQRE +K
Sbjct: 429  QCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVK 488

Query: 1895 RTPKENLQPVFEALDTLGNTKWRVNKRVLAVVDRIWSTGGRLAGLVDRDDIPLPEKPDTE 1716
            R  +  LQPVFEALDTLG+TKWR+NKRVL+V+DRIW+ GGRLA LVDRDD PLPE+PDTE
Sbjct: 489  RASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTE 548

Query: 1715 DEEELNQXXXXXXXXXXXXXXRHSQRCDIELKLTVARKLRDEAGFFYPHNLDFRGRAYPM 1536
            DE    +              RHSQRCDIELKL VARK++DE GFFYPHN+DFRGRAYPM
Sbjct: 549  DEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPM 608

Query: 1535 HPHLNHLGSDMCRGILEFAEGRPIGSSGLRWLKIHLANLFAGGVDKLSLEGRIAFTESHL 1356
            HPHLNHLGSD+CRG+L FAEGRP+G SGLRWLKIHLANLFAGGV+KLSLEGRIAFTE+H+
Sbjct: 609  HPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHM 668

Query: 1355 HDIFDSADRPLDGERWWLNAEDPFQCLAVCIHLAEALRSRSPEATISHIPVHQDGSCNGL 1176
             DIFDSAD+PL+G RWWLNAEDPFQCLAVCI+L+EA+RS SPE +ISHIPVHQDGSCNGL
Sbjct: 669  DDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGL 728

Query: 1175 QHYAALGRDKIGAAAVNLVEGERPADVYSGIAARVLDIVKRDAQLDPASYPEAKHARLLI 996
            QHYAALGRD++GAAAVNLV GE+PADVYSGIAARVLDI+KRDAQ DPA +P+A  AR L+
Sbjct: 729  QHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALV 788

Query: 995  NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLRERNNIADDAQLFGAACYAAKITLAALG 816
            NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL+ER  IADD++LFGAACYAAK+TL ALG
Sbjct: 789  NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALG 848

Query: 815  EMFEGARSIMNWLGDCAKLIASENQPVRWTTPLGLPVVQPYRIYGKHRVSTSLQVLTLQR 636
            EMFE ARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPYR  G+H + TSLQ+LTLQ+
Sbjct: 849  EMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQ 908

Query: 635  ETEKVMVSRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNK 456
            ETEKVMV RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGVHDSYWTHACDVD++N+
Sbjct: 909  ETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNR 968

Query: 455  ILREKFVELYQAPVLENLLESFQQSFPTLSFPTLPDRGDFDLSDVLQSSYFFN 297
            ILREKFVELY+ P+LE LLESFQ S+PTL FP LP+RGDFDL DVL+S YFFN
Sbjct: 969  ILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1323 bits (3423), Expect = 0.0
 Identities = 647/887 (72%), Positives = 745/887 (83%), Gaps = 3/887 (0%)
 Frame = -3

Query: 2948 ADEEAGGGDEVQKLLTEMGKQERRQATRGWWWQKRAKTGGNWNYMK---LKRRQVKIETE 2778
            ++E+  G DEVQ+L+ E+ K ++ +        K+ K  G     K   L+RRQ+K+ETE
Sbjct: 102  SEEDMSGVDEVQELVEEVNKGDKLE--------KQPKLIGGVAQGKHNVLRRRQIKMETE 153

Query: 2777 AWEQAAKEYKELLSDMCEQKLAPNLPYMKSLFLGWFEPLCKKIAQDQELCRQGKHKAAYA 2598
            AWE+AAKEY+ELLSDMCEQKLAPNLPY+KSLFLGWFEPL   IA +Q+LC+QGK++AAYA
Sbjct: 154  AWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYA 213

Query: 2597 PYFDLLPADKMAVITMHKIMALIMTGGENGCARVVSASCSVGEAIEQEIRIHKFLENXXX 2418
            PYFD LPAD MAVITMHK+M L+MTG  NG ARVV A+C +GEAIE E+RI +F+E    
Sbjct: 214  PYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKK 273

Query: 2417 XXXXXXXKREEKVPDIVIKDQEGLHKKVTNLMKKQKLQAVGRIVKGHDDSKPWTQPVKAQ 2238
                         P  V K+QE L KKV+ LMKKQKLQ V +IVK  DDSKPW Q    +
Sbjct: 274  KSASSNNPDGGSNP--VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVK 331

Query: 2237 VGSRLFELLLQSAYIQPPVDQSGDMLPDIRPAFVHTFRTSRKEGQKTGRRYGVIECDPLV 2058
            VGSRL ELL+++AYIQPP DQ GD  PDIRPAFVHT +T  KE QK  RRYGVIECDPLV
Sbjct: 332  VGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLV 391

Query: 2057 RKGLERASRHVVIPYMPMLIPPVRWTGYDKGAYLFLPSFIMRIHGAKQQREVLKRTPKEN 1878
            RKGLE+ +RH+VIPYMPML+PP+ WTGYDKGAYLFLPS++MRIHGA+QQRE +KR P++ 
Sbjct: 392  RKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKA 451

Query: 1877 LQPVFEALDTLGNTKWRVNKRVLAVVDRIWSTGGRLAGLVDRDDIPLPEKPDTEDEEELN 1698
            L+P FEAL+TLGNTKWR+NKRVL V+DRIW++GGRLA LVDR+D+PLPE+PDTEDE E+ 
Sbjct: 452  LEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 511

Query: 1697 QXXXXXXXXXXXXXXRHSQRCDIELKLTVARKLRDEAGFFYPHNLDFRGRAYPMHPHLNH 1518
            +              RHSQRCDIELKL VARK++DE GFFYPHNLDFRGRAYPMHP+LNH
Sbjct: 512  KWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNH 571

Query: 1517 LGSDMCRGILEFAEGRPIGSSGLRWLKIHLANLFAGGVDKLSLEGRIAFTESHLHDIFDS 1338
            LGSD+CRGILEFAEGRP+G SGLRWLKIHLAN++AGGVDKLS EGR+AFTE+HL DIFDS
Sbjct: 572  LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDS 631

Query: 1337 ADRPLDGERWWLNAEDPFQCLAVCIHLAEALRSRSPEATISHIPVHQDGSCNGLQHYAAL 1158
            ADRPL+G RWWL+AEDPFQCLA CI+L+EALRS SPE TISH+PVHQDGSCNGLQHYAAL
Sbjct: 632  ADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAAL 691

Query: 1157 GRDKIGAAAVNLVEGERPADVYSGIAARVLDIVKRDAQLDPASYPEAKHARLLINQVDRK 978
            GRDK+GAAAVNLV GE+PADVYSGIAARVLDI++RDAQ DPA+ P A  ARLLI+QVDRK
Sbjct: 692  GRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRK 751

Query: 977  LVKQTVMTSVYGVTYIGARDQIKRRLRERNNIADDAQLFGAACYAAKITLAALGEMFEGA 798
            LVKQTVMTSVYGVTYIGARDQIKRRL+ER  IAD+ ++F A+CYAAK TL ALGEMFE A
Sbjct: 752  LVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAA 811

Query: 797  RSIMNWLGDCAKLIASENQPVRWTTPLGLPVVQPYRIYGKHRVSTSLQVLTLQRETEKVM 618
            RSIM+WLGDCAK+IASEN PVRW TPLGLPVVQPYR  G+H + TSLQVL+LQRET+KVM
Sbjct: 812  RSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVM 871

Query: 617  VSRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNKILREKF 438
            V RQRTAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVDEMN+ILREKF
Sbjct: 872  VKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKF 931

Query: 437  VELYQAPVLENLLESFQQSFPTLSFPTLPDRGDFDLSDVLQSSYFFN 297
            VELY  P+LENLLE FQ+SFPTL+FP LP+RGDFDL +VL+S YFFN
Sbjct: 932  VELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978