BLASTX nr result
ID: Atractylodes22_contig00000164
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00000164
(5243 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2935 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2836 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2836 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2817 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2805 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2935 bits (7608), Expect = 0.0
Identities = 1450/1536 (94%), Positives = 1494/1536 (97%), Gaps = 2/1536 (0%)
Frame = -2
Query: 5044 MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI 4865
MD+RFPYSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 4685
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4684 FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDGDEPVKKSRGGCGAQQPKITI 4505
FKQAQKIRNPKNRLKKILDACK+KSKCEGGDEI++Q D DEPVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4504 EGMKMVAEYKLQKKKNDDAEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4325
EGMKM+AEYK+Q+KKNDD EQLPEP ERKQQLSAERVL+VLKRISDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4324 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4145
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4144 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3965
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3964 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3785
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3784 EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3605
EDGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3604 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3425
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3424 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN 3245
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3244 LIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3065
L+RT+AWHSE+ETG++TPGDTQVRIEKGE++ GTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL 2885
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETISKAKNEVKELIRAAQ++QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2884 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2705
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2704 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2525
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2524 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2345
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2344 LDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRIQ 2165
LDSLK+KKGEFDR++KYEIDD+NWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2164 LGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP 1985
LGTEI TTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERL+VVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1984 GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG 1805
GDDL+S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1804 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK 1625
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1624 PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVDFVKSYYEMPDEEI 1445
PDVSKTK+RAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVDFVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1444 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1265
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1264 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFKP 1085
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVN+FDE+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1084 EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 905
EVEWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 904 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 725
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 724 LRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSPI--TP 551
LRGVTENIMLGQLAPIGTGDC LYLN+QMLQ AI++QLPSYM+GLD GMTP RSPI TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 550 FHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 443
+HDG MSP NYLLSPNLRLSPI DAQFSPYVGGM F
Sbjct: 1501 YHDGMMSP-NYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2836 bits (7351), Expect = 0.0
Identities = 1396/1536 (90%), Positives = 1467/1536 (95%), Gaps = 2/1536 (0%)
Frame = -2
Query: 5044 MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI 4865
MD+RFPYSPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 4685
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4684 FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDGDEPVKKSRGGCGAQQPKITI 4505
FKQA +I+NPKNRL+KILDACK+K+KCEGGDEID Q QD D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4504 EGMKMVAEYKLQKKKNDDAEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4325
EGMKM AEYK Q+KKNDD EQLPEP ERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4324 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4145
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4144 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3965
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3964 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3785
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3784 EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3605
+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3604 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3425
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3424 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN 3245
LLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3244 LIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3065
L RT+AWHSE+ETG++TPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL 2885
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATME INETIS AKNEVK LI+ AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2884 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2705
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2704 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2525
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2524 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2345
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2344 LDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRIQ 2165
LDSLK+KK EF+R+++YE +D+NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2164 LGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP 1985
LGTEI TTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERL+VVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1984 GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG 1805
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1804 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK 1625
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1624 PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVDFVKSYYEMPDEEI 1445
P+ +KTK+RAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1444 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1265
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1264 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFKP 1085
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1084 EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 905
E+EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 904 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 725
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 724 LRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSPI--TP 551
LRGVTENIMLGQLAPIGTG C LYLN++ML+ AI++QLPSY+DGLD GMTP RSPI TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 550 FHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 443
+H+G MSP NYLLSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1501 YHEGMMSP-NYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2836 bits (7351), Expect = 0.0
Identities = 1396/1536 (90%), Positives = 1467/1536 (95%), Gaps = 2/1536 (0%)
Frame = -2
Query: 5044 MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI 4865
MD+RFPYSPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 4685
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4684 FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDGDEPVKKSRGGCGAQQPKITI 4505
FKQA +I+NPKNRL+KILDACK+K+KCEGGDEID Q QD D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4504 EGMKMVAEYKLQKKKNDDAEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4325
EGMKM AEYK Q+KKNDD EQLPEP ERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4324 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4145
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4144 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3965
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3964 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3785
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3784 EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3605
+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3604 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3425
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3424 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN 3245
LLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3244 LIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3065
L RT+AWHSE+ETG++TPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL 2885
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATME INETIS AKNEVK LI+ AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2884 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2705
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2704 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2525
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2524 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2345
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2344 LDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRIQ 2165
LDSLK+KK EF+R+++YE +D+NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2164 LGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP 1985
LGTEI TTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERL+VVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1984 GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG 1805
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1804 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK 1625
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1624 PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVDFVKSYYEMPDEEI 1445
P+ +KTK+RAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1444 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1265
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1264 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFKP 1085
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1084 EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 905
E+EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 904 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 725
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 724 LRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSPI--TP 551
LRGVTENIMLGQLAPIGTG C LYLN++ML+ AI++QLPSY+DGLD GMTP RSPI TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 550 FHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 443
+H+G MSP NYLLSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1501 YHEGMMSP-NYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2817 bits (7303), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1459/1536 (94%), Gaps = 2/1536 (0%)
Frame = -2
Query: 5044 MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI 4865
MDIRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 4685
DRK+KCETC A+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4684 FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDGDEPVKKSRGGCGAQQPKITI 4505
FKQA +IRNPKNRLKKILDACK+KSKCEGGDEID QD DEPVKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4504 EGMKMVAEYKLQKKKNDDAEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4325
EGMKM+AEYK Q+KK+DD EQLPEP ERKQ LSAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4324 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4145
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4144 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3965
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3964 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3785
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3784 EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3605
+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3604 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3425
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3424 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN 3245
LLGCRK+TKRDTFI KDVFMNILMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3244 LIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3065
LIR ++WHSE+E G +TPGDT VRIEKGE++TGTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL 2885
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMETIN+TIS AK +VK+LIR AQ+K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2884 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2705
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2704 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2525
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2524 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2345
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2344 LDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRIQ 2165
LDSLK+KK EFDR+++YE DD+NW P+YML E VEDLKTIREFRNVF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2164 LGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP 1985
L TEI TTGD+S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERL+VVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1984 GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG 1805
G+DLLS EAQKNATL FNILLRSTFASKRVL EYRL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1804 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK 1625
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1624 PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVDFVKSYYEMPDEEI 1445
DV KTK+RAK+VQCALEYTTLRSVTQATEVWYDPDPMST+IEED DFVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1444 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1265
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1264 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFKP 1085
NDEAPKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV +FDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1084 EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 905
EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 904 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 725
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 724 LRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSPI--TP 551
LRGVTENIMLGQLAPIGTG+C LYLN++ML+ AI++QLPSYMDGLD GMTP RSPI TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 550 FHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 443
+H+G MSP +YLLSPNLRLSP +DAQFSPYVGGM F
Sbjct: 1501 YHEGLMSP-SYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2805 bits (7272), Expect = 0.0
Identities = 1383/1536 (90%), Positives = 1455/1536 (94%), Gaps = 2/1536 (0%)
Frame = -2
Query: 5044 MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI 4865
MD+RFPYSPAEVAKVR+VQFGILSPDEIRQMSVV IE ETTERGKPK GLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 4685
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEEDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4684 FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDGDEPVKKSRGGCGAQQPKITI 4505
FKQA KI+NPKNRLKKILDACK+K+KCEGGD+ID +QD DEPVKKSRGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4504 EGMKMVAEYKLQKKKNDDAEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4325
EGMKM+AEYK Q+KKNDD EQLPEP ERKQ L+AERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4324 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4145
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 4144 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3965
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3964 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3785
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3784 EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3605
+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3604 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3425
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3424 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN 3245
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3244 LIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3065
LIRTAAWHS++E G +TPGDT VRIEKGE+++GT+CKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL 2885
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETIS AKN VKELIR AQ+K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2884 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2705
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2704 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2525
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2524 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2345
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2344 LDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRIQ 2165
LDSLK+KK EFDR++KYE+DD+NWNP+YM +H++DLK IRE R+VFDAEVQKLEADR Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 2164 LGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP 1985
LGTEI TTGD+SWP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERL+VVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 1984 GDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG 1805
GDD LS+EAQKNATLFF ILLRST ASKRVL +YRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1804 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYLK 1625
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1624 PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVDFVKSYYEMPDEEI 1445
P+ +KTK+RAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDVDFVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1444 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1265
P+KISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1264 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFKP 1085
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KV++FDENEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 1084 EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 905
EWMLDTEGVNLLAVM +E+VDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 904 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 725
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 724 LRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSP--ITP 551
LRGVTENIMLGQLAPIGTGDC LYLN+ ML+ AI++QLPSYMDGLD GMTP RSP +TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500
Query: 550 FHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 443
+HDG MSP +YLLSP+LRLSP DAQFSPYV GM F
Sbjct: 1501 YHDGMMSP-SYLLSPSLRLSPTTDAQFSPYVSGMPF 1535