BLASTX nr result
ID: Atractylodes22_contig00000112
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00000112
(3822 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2203 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2193 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2187 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2183 0.0
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia... 2183 0.0
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2203 bits (5708), Expect = 0.0
Identities = 1087/1172 (92%), Positives = 1110/1172 (94%)
Frame = +1
Query: 124 EEEYDQAYNDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 303
EEEYD DEEE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 6 EEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 65
Query: 304 IRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 483
IRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 66 IRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 125
Query: 484 YVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYD 663
YVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYD
Sbjct: 126 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 185
Query: 664 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 843
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM
Sbjct: 186 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 245
Query: 844 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 1023
LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL
Sbjct: 246 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 305
Query: 1024 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGVGEYCETKK 1203
RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGVGEYCETKK
Sbjct: 306 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 365
Query: 1204 AYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 1383
AYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK
Sbjct: 366 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 425
Query: 1384 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 1563
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 426 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 485
Query: 1564 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 1743
RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL
Sbjct: 486 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 545
Query: 1744 EFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXXXXNTEVGV 1923
EFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM NTEVGV
Sbjct: 546 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGV 605
Query: 1924 VRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXXETPEDGGWHDLVANGFX 2103
VRDIRLKELRIYTDYGRCSRPLFIVE ETPEDGGWHDLVA GF
Sbjct: 606 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFI 665
Query: 2104 XXXXXXXXXXXXXXXXXNDLVNARSNPDESYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 2283
NDLV+AR NP+E+YS+TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 666 EYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 725
Query: 2284 SPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 2463
SPRNTYQSAMGKQAMGIYVTN+QFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 726 SPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 785
Query: 2464 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 2643
IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM
Sbjct: 786 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 845
Query: 2644 GMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTSLRHSE 2823
GMRHGSYDKLDDDGLAPPGTRV GEDV+IGKTTPIAQD+AQG A+RYTRRDHSTSLRHSE
Sbjct: 846 GMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSE 905
Query: 2824 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 3003
TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEG 965
Query: 3004 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQ 3183
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQ
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1025
Query: 3184 MRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 3363
MRGFETMYNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 3364 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 3543
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 3544 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3639
NKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2193 bits (5683), Expect = 0.0
Identities = 1084/1177 (92%), Positives = 1112/1177 (94%), Gaps = 2/1177 (0%)
Frame = +1
Query: 115 MDLEEEYDQAYN--DEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 288
MD+E+EY+ YN D+EE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 289 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 468
SADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 469 YSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLTELG 648
YSAPLYVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 649 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 828
ECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPPST
Sbjct: 181 ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPST 240
Query: 829 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 1008
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ 300
Query: 1009 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGVGEY 1188
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT+EKRIKYA++ILQKEMLPHVGVGEY
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY 360
Query: 1189 CETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 1368
CETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 1369 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 1548
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 1549 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 1728
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 1729 AYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXXXXN 1908
AYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM N
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN 600
Query: 1909 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXXETPEDGGWHDLV 2088
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE E+P++GGWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV 660
Query: 2089 ANGFXXXXXXXXXXXXXXXXXXNDLVNARSNPDESYSDTYTHCEIHPSLILGVCASIIPF 2268
A G+ NDLV AR NP ++YSDTYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF 720
Query: 2269 PDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 2448
PDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 2449 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 2628
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 781 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 2629 RANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTS 2808
RA+TMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+QDDAQGQASRYTR+DHSTS
Sbjct: 841 RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS 900
Query: 2809 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 2988
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
Sbjct: 901 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Query: 2989 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 3168
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALH
Sbjct: 961 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1020
Query: 3169 KCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 3348
KCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1080
Query: 3349 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 3528
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
Sbjct: 1081 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 1140
Query: 3529 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3639
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2187 bits (5667), Expect = 0.0
Identities = 1086/1180 (92%), Positives = 1111/1180 (94%), Gaps = 5/1180 (0%)
Frame = +1
Query: 115 MDLEEEYDQA----YNDEEED-ITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEI 279
M+ ++EYDQ Y DE+ED ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 280 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 459
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 460 NLTYSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLT 639
NLTYSAPLYVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLT
Sbjct: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 640 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 819
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 820 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 999
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 1000 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGV 1179
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGV
Sbjct: 301 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 1180 GEYCETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 1359
GEYCETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 1360 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 1539
DVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 1540 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 1719
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 1720 GSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXX 1899
GSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV 600
Query: 1900 XXNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXXETPEDGGWH 2079
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE E+ E+GGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWH 660
Query: 2080 DLVANGFXXXXXXXXXXXXXXXXXXNDLVNARSNPDESYSDTYTHCEIHPSLILGVCASI 2259
DLVA GF +DLV AR NP+E+YSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASI 720
Query: 2260 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 2439
IPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 2440 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 2619
QLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 2620 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDH 2799
RPDRANTMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPIAQ++AQGQ++RYTRRDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDH 900
Query: 2800 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 2979
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
Query: 2980 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISR 3159
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+
Sbjct: 961 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
Query: 3160 ALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 3339
ALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
Query: 3340 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 3519
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1140
Query: 3520 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3639
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 2183 bits (5656), Expect = 0.0
Identities = 1083/1180 (91%), Positives = 1110/1180 (94%), Gaps = 5/1180 (0%)
Frame = +1
Query: 115 MDLEEE--YDQAY---NDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEI 279
MDLEEE YD+ D+EE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLEEEQEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 280 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 459
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 460 NLTYSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLT 639
NLTYSAPLYVDVSKR IKKGHDGEEVTE QDF KVFIGKVPIMLRSSYCTL+QNSEKDLT
Sbjct: 121 NLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 640 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 819
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 820 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 999
PSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 1000 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGV 1179
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGV
Sbjct: 301 YTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 1180 GEYCETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 1359
GEYCETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 1360 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 1539
DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 1540 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 1719
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 1720 GSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXX 1899
GSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG W+GIHRDPDM
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRV 600
Query: 1900 XXNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXXETPEDGGWH 2079
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ E+PEDGGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWH 660
Query: 2080 DLVANGFXXXXXXXXXXXXXXXXXXNDLVNARSNPDESYSDTYTHCEIHPSLILGVCASI 2259
DLV+ GF NDLV AR NP+++YSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASI 720
Query: 2260 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 2439
IPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 2440 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 2619
QLPAGINAIV+I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 2620 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDH 2799
RPDRANTMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+Q++AQGQA RYTRRDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH 900
Query: 2800 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 2979
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
Query: 2980 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISR 3159
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+
Sbjct: 961 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
Query: 3160 ALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 3339
ALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
Query: 3340 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 3519
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1140
Query: 3520 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3639
SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180
>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 2183 bits (5656), Expect = 0.0
Identities = 1082/1181 (91%), Positives = 1108/1181 (93%), Gaps = 8/1181 (0%)
Frame = +1
Query: 121 LEEEYDQAYND--------EEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQE 276
+EEEY++ D EEE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQE
Sbjct: 1 MEEEYEEQQYDMNNEEEEEEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 60
Query: 277 IVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARL 456
IVDESADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARL
Sbjct: 61 IVDESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARL 120
Query: 457 RNLTYSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDL 636
RNLTYSAPLYVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDL
Sbjct: 121 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 180
Query: 637 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 816
TELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAESQNR
Sbjct: 181 TELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNR 240
Query: 817 PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 996
PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF
Sbjct: 241 PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 300
Query: 997 ADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVG 1176
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVG
Sbjct: 301 NDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVG 360
Query: 1177 VGEYCETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 1356
VGEYCETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT
Sbjct: 361 VGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 420
Query: 1357 RDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 1536
RDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL
Sbjct: 421 RDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 480
Query: 1537 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 1716
TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT
Sbjct: 481 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 540
Query: 1717 VGSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXX 1896
VGSAAYPILEFLEE GTENFEEISPAVIPQ+TKIFV+G W+GIHRDPDM
Sbjct: 541 VGSAAYPILEFLEEXGTENFEEISPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRR 600
Query: 1897 XXXNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXXETPEDGGW 2076
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE ETPE+GGW
Sbjct: 601 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGW 660
Query: 2077 HDLVANGFXXXXXXXXXXXXXXXXXXNDLVNARSNPDESYSDTYTHCEIHPSLILGVCAS 2256
HDLVA G+ NDLV A NP+++YSDTYTHCEIHPSLILGVCAS
Sbjct: 661 HDLVAKGYIEYIDTEEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCAS 720
Query: 2257 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 2436
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 721 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 780
Query: 2437 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 2616
RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF
Sbjct: 781 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 840
Query: 2617 GRPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRD 2796
GRPDRA+TMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+QDDAQGQASRYTR+D
Sbjct: 841 GRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKD 900
Query: 2797 HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 2976
HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 901 HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 960
Query: 2977 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 3156
EDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 961 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1020
Query: 3157 RALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 3336
+ALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR
Sbjct: 1021 KALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1080
Query: 3337 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK 3516
QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK
Sbjct: 1081 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK 1140
Query: 3517 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 3639
NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1181