BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00054977
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas...   114   6e-24
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...   112   3e-23
gb|ABF98227.1| retrotransposon protein, putative, unclassified [...   107   1e-21
gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]     107   1e-21
emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]   103   1e-20

>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
            finger, CCHC-type; Peptidase aspartic, active site;
            Polynucleotidyl transferase, Ribonuclease H fold
            [Medicago truncatula]
          Length = 1297

 Score =  114 bits (286), Expect = 6e-24
 Identities = 61/112 (54%), Positives = 73/112 (65%)
 Frame = -1

Query: 351  KVGNVAYKLQLPESAKIHPVFHVSLLKKAVGNSIVEPSLPPGLEADSAIPPQPAKCLATR 172
            +VG VAYKL+LPE +++H VFHVSLLKKAVGN   E +LP  LE D  +  +P   L  R
Sbjct: 1156 RVGAVAYKLKLPEGSRVHSVFHVSLLKKAVGNYHEEENLPD-LEEDKGVVIEPETVLTRR 1214

Query: 171  EISKDGEKIIQWLIQWQQGTVEDATWEDVFSIQSQFPDFRLEDKPALHGAGI 16
             I   GEKI Q L+ W    VE+ATWED   I+SQFP+F LEDK  L G  I
Sbjct: 1215 TIQVQGEKIDQVLVHWMGQKVEEATWEDTLIIRSQFPNFYLEDKAMLSGGSI 1266


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score =  112 bits (280), Expect = 3e-23
 Identities = 55/114 (48%), Positives = 76/114 (66%)
 Frame = -1

Query: 357  LTKVGNVAYKLQLPESAKIHPVFHVSLLKKAVGNSIVEPSLPPGLEADSAIPPQPAKCLA 178
            L ++G  AYKLQLP S+KIHPVFHVSLLKK VGN+ V P++PP ++ D  +  +P + L 
Sbjct: 1488 LQRIGATAYKLQLPPSSKIHPVFHVSLLKKVVGNTPVLPTIPPHIDVDMELVVEPEELLD 1547

Query: 177  TREISKDGEKIIQWLIQWQQGTVEDATWEDVFSIQSQFPDFRLEDKPALHGAGI 16
             R+I +  +   + LI+W+     +ATWED+  I  +FP F LEDK  + GAGI
Sbjct: 1548 VRQIRQGKQTFTECLIKWKGLPAFEATWEDMSPIHLRFPSFHLEDKVNVWGAGI 1601


>gb|ABF98227.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1160

 Score =  107 bits (267), Expect = 1e-21
 Identities = 53/102 (51%), Positives = 64/102 (62%)
 Frame = -1

Query: 357  LTKVGNVAYKLQLPESAKIHPVFHVSLLKKAVGNSIVEPSLPPGLEADSAIPPQPAKCLA 178
            L K+G VAYKLQLPE A IHPVFHVS LKK VG   +     P + AD  +  +P   LA
Sbjct: 1058 LEKIGKVAYKLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADGTVKTEPLAVLA 1117

Query: 177  TREISKDGEKIIQWLIQWQQGTVEDATWEDVFSIQSQFPDFR 52
             R I +  E ++QWLI W+  T EDATWE+   IQ+ FP FR
Sbjct: 1118 RRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFR 1159


>gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1246

 Score =  107 bits (267), Expect = 1e-21
 Identities = 53/102 (51%), Positives = 64/102 (62%)
 Frame = -1

Query: 357  LTKVGNVAYKLQLPESAKIHPVFHVSLLKKAVGNSIVEPSLPPGLEADSAIPPQPAKCLA 178
            L K+G VAYKLQLPE A IHPVFHVS LKK VG   +     P + AD  +  +P   LA
Sbjct: 1144 LEKIGKVAYKLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADGTVKTEPLAVLA 1203

Query: 177  TREISKDGEKIIQWLIQWQQGTVEDATWEDVFSIQSQFPDFR 52
             R I +  E ++QWLI W+  T EDATWE+   IQ+ FP FR
Sbjct: 1204 RRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFR 1245


>emb|CAN60449.1| hypothetical protein VITISV_036155 [Vitis vinifera]
          Length = 647

 Score =  103 bits (258), Expect = 1e-20
 Identities = 54/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = -1

Query: 351 KVGNVAYKLQLPESAKIHPVFHVSLLKKAVGNS-IVEPSLPPGLEADSAIPPQPAKCLAT 175
           ++G VAY+LQLP  ++IHPVFHVSLLKK +G+S    P+LPP L  D A   +P + + T
Sbjct: 518 RIGKVAYQLQLPAGSRIHPVFHVSLLKKTIGDSNACCPTLPP-LTDDGAFIIEPTEIIDT 576

Query: 174 REISKDGEKIIQWLIQWQQGTVEDATWEDVFSIQSQFPDFRLEDKPALHGAGIDK 10
           R   K G    + L++W+   VEDATWE+   +  +FPD  LEDK  +   GIDK
Sbjct: 577 RWFKKGGNFFEECLVKWKNLLVEDATWENAAELHDRFPDLNLEDKVLVKVGGIDK 631