BLASTX nr result
ID: Atractylodes21_contig00051391
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00051391
(509 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_039820.1| polyprotein [Commelina yellow mottle virus] gi|... 73 3e-24
tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacillifo... 69 3e-20
gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subc... 66 7e-20
emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group] gi... 65 7e-20
tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacillifo... 65 1e-19
>ref|NP_039820.1| polyprotein [Commelina yellow mottle virus]
gi|130594|sp|P19199.2|POL_COYMV RecName: Full=Polyprotein
P3; Includes: RecName: Full=Putative movement protein;
Short=MP; Includes: RecName: Full=Capsid protein;
AltName: Full=Coat protein; Short=CP; Includes: RecName:
Full=Protease; Short=PR; Includes: RecName: Full=Reverse
transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H gi|59050|emb|CAA37110.1| unnamed
protein product [Commelina yellow mottle virus]
Length = 1886
Score = 72.8 bits (177), Expect(2) = 3e-24
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = +3
Query: 57 PLVDDYIIIECDGCKDGWGTILICKPNKHAPKNLERIAVYTSENFNKIGQNLISLDFEIQ 236
P D +IIIE DGC GWG + K +KH P++ ERI Y S +FN I ++D EIQ
Sbjct: 1704 PPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKS---TIDAEIQ 1760
Query: 237 ALINSLDKFKLY 272
A I+ LDKFK+Y
Sbjct: 1761 AAIHGLDKFKIY 1772
Score = 63.9 bits (154), Expect(2) = 3e-24
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = +2
Query: 290 VGTDCEAIVKFLKNENSKKINRTRWLNLQNLIQGCGYTIEFEHIKCTNNHLADLLSRQLK 469
+ +DCEAI+KF N K +R RWL + + G G T+ FEHI +N LAD LSR +
Sbjct: 1781 IRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGLGITVTFEHIDGKHNGLADALSRMI- 1839
Query: 470 KHFYAGKDEES 502
+F K++ES
Sbjct: 1840 -NFIVEKNDES 1849
>tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 68.6 bits (166), Expect(2) = 3e-20
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 284 FTVGTDCEAIVKFLKNENSKKINRTRWLNLQNLIQGCGYTIEFEHIKCTNNHLADLLSR 460
FTV TDCEAI ++ NSKK + RW+ +++I G GY + FEHIK +NHL DLLSR
Sbjct: 1654 FTVRTDCEAICRYYNQLNSKKSSTRRWILFEDIITGNGYKVIFEHIKGKDNHLPDLLSR 1712
Score = 54.7 bits (130), Expect(2) = 3e-20
Identities = 27/73 (36%), Positives = 46/73 (63%)
Frame = +3
Query: 57 PLVDDYIIIECDGCKDGWGTILICKPNKHAPKNLERIAVYTSENFNKIGQNLISLDFEIQ 236
PL + Y IIE D + GWG +L +P K++ K+ E++ Y S ++ + + + D EI
Sbjct: 1579 PLEESYFIIETDASQLGWGAVLKQRPTKYSSKSEEKVCRYASGSYKL--KTVGNTDREIL 1636
Query: 237 ALINSLDKFKLYL 275
A+IN+++ F+LYL
Sbjct: 1637 AIINAINAFRLYL 1649
>gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 730
Score = 66.2 bits (160), Expect(2) = 7e-20
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = +2
Query: 284 FTVGTDCEAIVKFLKNENSKKINRTRWLNLQNLIQGCGYTIEFEHIKCTNNHLADLLSR- 460
FTV TDCEAI ++ NSKK + RW+ +++I G GY + FEHIK +N+L D+LSR
Sbjct: 487 FTVRTDCEAICRYYNQLNSKKSSTRRWVLFEDIITGNGYKVIFEHIKGKDNNLPDMLSRL 546
Query: 461 -QLKKHFY 481
+L+K Y
Sbjct: 547 PELQKPIY 554
Score = 55.8 bits (133), Expect(2) = 7e-20
Identities = 29/73 (39%), Positives = 45/73 (61%)
Frame = +3
Query: 57 PLVDDYIIIECDGCKDGWGTILICKPNKHAPKNLERIAVYTSENFNKIGQNLISLDFEIQ 236
PL + Y IIE D + GWG IL +P K + K+ E+I Y S ++ + + + D EI
Sbjct: 412 PLEESYFIIETDASQYGWGAILKQRPTKFSAKSEEKICRYASGSYKL--KTVNNTDREIM 469
Query: 237 ALINSLDKFKLYL 275
A+IN+++ F+LYL
Sbjct: 470 AIINAINAFRLYL 482
>emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group]
gi|116310779|emb|CAH67571.1| H0315A08.1 [Oryza sativa
Indica Group]
Length = 685
Score = 65.5 bits (158), Expect(2) = 7e-20
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = +2
Query: 284 FTVGTDCEAIVKFLKNENSKKINRTRWLNLQNLIQGCGYTIEFEHIKCTNNHLADLLSR- 460
FTV TDCEAI ++ NSKK + RW+ +++I G GY + FEHIK +N+L D+LSR
Sbjct: 549 FTVITDCEAICRYYNQLNSKKSSTRRWVLFEDIITGNGYKVIFEHIKGKDNNLPDMLSRL 608
Query: 461 -QLKKHFY 481
+L+K Y
Sbjct: 609 PELQKPIY 616
Score = 56.6 bits (135), Expect(2) = 7e-20
Identities = 29/73 (39%), Positives = 45/73 (61%)
Frame = +3
Query: 57 PLVDDYIIIECDGCKDGWGTILICKPNKHAPKNLERIAVYTSENFNKIGQNLISLDFEIQ 236
PL + Y IIE D + GWG IL +P K + K+ E+I Y S ++ + + + D EI
Sbjct: 474 PLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKL--KTVNNTDREIM 531
Query: 237 ALINSLDKFKLYL 275
A+IN+++ F+LYL
Sbjct: 532 AIINAINAFRLYL 544
>tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 64.7 bits (156), Expect(2) = 1e-19
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +2
Query: 284 FTVGTDCEAIVKFLKNENSKKINRTRWLNLQNLIQGCGYTIEFEHIKCTNNHLADLLSR 460
FTV TDCEAI ++ NSKK + RW+ +++I G GY + FEHIK +N+L D+LSR
Sbjct: 1654 FTVRTDCEAICRYYNQLNSKKSSTRRWVLFEDIITGNGYKVIFEHIKGKDNNLPDMLSR 1712
Score = 56.6 bits (135), Expect(2) = 1e-19
Identities = 29/73 (39%), Positives = 45/73 (61%)
Frame = +3
Query: 57 PLVDDYIIIECDGCKDGWGTILICKPNKHAPKNLERIAVYTSENFNKIGQNLISLDFEIQ 236
PL + Y IIE D + GWG IL +P K + K+ E+I Y S ++ + + + D EI
Sbjct: 1579 PLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKL--KTVNNTDREIM 1636
Query: 237 ALINSLDKFKLYL 275
A+IN+++ F+LYL
Sbjct: 1637 AIINAINAFRLYL 1649